Xiphophorus hellerii (green swordtail): 116710129
Help
Entry
116710129 CDS
T07363
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116710129
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116710129
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
116710129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Siah-Interact_N
Motif
Other DBs
NCBI-GeneID:
116710129
NCBI-ProteinID:
XP_032404867
LinkDB
All DBs
Position
2:22505204..22566780
Genome browser
AA seq
763 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKELSKSSHDETVEAFRAARDPVVVQVIRRTPSGR
PHGPPQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVCPFLLSDSCHSLHTMDQDYY
EGTDYLSPVPADGDRMEEFEYEEVELCRLSCHEKLGLTLCYRTDEEEDVAIYVSEVSPNG
IAARDGRIREGDRILQINGNDVQDREEAMAALSSDDFKNIVLLVARPEMQLEEAWLDDEH
SEFLEQLKMEMLEEQRREEMELAALQEEQEKQQRSEDDKPSCSTFSYSRDSLQSLKERKE
NSDHNVLAQIQRRLSRCLRDSQDSHCTSGSKRLEDKDDEDNDESEGDRFQQLLELKCQIR
NSGEYDLFYSRRSTIECSMAEQSDVQHELRMLNEELRSIELECQNIMQAHKLRKSQQSPL
MGRSAPSIKSQNPKHGESVKGKLGDINERMEKSDKDSSSAYNTAESSRSTPLAMDRSPEH
SLQRMVSLTNQRNLYGGFATGHSPSPSPLPTCRTPVLGKSSSPDHSNPSESDQTPQAEEE
GKRKLKQCTSRIPYFSPSHTSQQRQANIPAHARHYQSYMQLIQQRSAVEYAQSQLSLLSV
CKEPQRPINEPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMS
EMKMGRYWSKEERKQHLVRAKEQRRRREFMQRSRLESLKENPQSSSEGRKEVSIIELSHK
KMLKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVTTV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaagcgagaggaacactacaagctgctgtatgag
attgcacaggtgaatgggaaggagttgtccaaatccagccacgatgagactgtggaggcc
ttccgagctgccagggaccccgtcgtggtgcaggtcatcaggcgtaccccgagcggtcgc
ccccacggcccccctcaggaaatccatgtggtggatgtgtgcactcagaccgacatcacc
tttgaacacatcatggcgctggcaaagctccggccttcaacccctcctgtgcctgacgtc
tgtcccttcctgctctctgacagctgtcattcccttcatacaatggaccaagattactat
gaaggtaccgactacctctcccccgtcccagctgacggagacagaatggaggagtttgag
tacgaggaagtcgaactttgtcgtctcagctgtcatgaaaaactaggcctcactctgtgc
tatcgaacggatgaagaggaggatgtggccatctatgtcagtgaggtcagtccaaacggc
attgccgccagagacggacggatccgagaaggggaccgaatcttacagataaacggcaat
gatgtgcaagacagagaagaagcaatggctgctctctccagtgatgacttcaagaacatc
gtactactggtcgcccgacctgagatgcagctggaagaggcttggctggatgatgagcat
agcgagttcctggagcagctgaagatggaaatgttggaggagcagcggagagaggagatg
gaattagctgccttacaagaagaacaggaaaagcagcagagatccgaagatgacaagcct
tcctgttcaacattttcttactcaagagacagcctgcaaagtctgaaagagagaaaggaa
aactcagaccacaacgtcttagcccaaatccagagacgcctgtcccggtgcctacgggac
agtcaggactcccattgtaccagtggtagcaagcgactggaggacaaagacgatgaggac
aatgatgagtcagagggagatcgtttccagcaacttttggagctaaaatgtcagatacgc
aacagcggcgagtacgaccttttctacagccgccgcagtactattgagtgcagcatggcg
gaacagagcgatgtgcaacatgagctgcgtatgctaaatgaggagctacgcagtattgaa
cttgagtgtcagaacattatgcaggcccataagctgcgcaagagtcagcaatctccctta
atgggacgttctgcaccctccatcaaaagtcaaaaccccaaacatggagagtctgttaag
ggaaagctgggggacattaatgagaggatggaaaagtctgacaaggacagctccagtgcc
tacaacactgccgagagttctcggagcacgcccttggcgatggaccgctccccagagcac
tctctccagagaatggtcagtctcaccaaccagaggaacctctatggcggctttgctact
ggtcactcaccgagcccaagccccttaccaacctgcagaacccccgttctgggcaaaagc
agcagccccgaccacagtaacccttcagagtcagatcagacacctcaggctgaggaggag
ggtaaaagaaagttaaaacaatgcacttcccggattccttacttctctccttcccacact
tcccagcagaggcaggccaacattccagctcatgcccgtcactaccagagctacatgcag
ctgatccagcagcgttcagctgttgagtacgctcagagccagctcagcctgcttagtgtc
tgcaaagagcctcagagacccattaatgaacccaagatggagtggaaagtcaagatccgc
agcgatggcacccgctacatcaccaagaggcctgtgagagacaagatcctgagggagcgg
gccttgaagattaaagaggaacgcagtggggggatgacaacggatgacgatgcaatgagt
gagatgaagatggggaggtactggagtaaagaggaaaggaaacagcacctggtcagggca
aaagaacagaggagaagacgagaattcatgcagcgtagtcggctggaaagcttgaaggag
aaccctcagagcagcagcgaaggtcgaaaggaagtcagtattatagagctaagccacaag
aagatgctgaagaaacgcaataagaagattttggacaattggatgaccatccaggagctg
atgacacacggcactaaggcccccgagggagcaaaggtgcataatgccttcctctcagtc
actactgtatag
DBGET
integrated database retrieval system
