Xiphophorus hellerii (green swordtail): 116710153
Help
Entry
116710153 CDS
T07363
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116710153 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116710153 (smarcc2)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116710153 (smarcc2)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116710153 (smarcc2)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116710153 (smarcc2)
PBAF complex
116710153 (smarcc2)
GBAF(ncBAF) complex
116710153 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
116710153
NCBI-ProteinID:
XP_032404905
LinkDB
All DBs
Position
20:complement(19554101..19569413)
Genome browser
AA seq
1054 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEDKTSSSHIVVP
IPSSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEELSKDLDEASPVPASEEGTTAKTN
NTKKDSESTPVKGGTDVDEQEDESMETTGKEEEEGSPSVKGEPVKSSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQPMISFPDKVKEKPTDLQNFGLRTDMYSKKTGSAKSKSAASSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSTLGPLAYQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPDESSDESKSDSQLSEEKRDAKESKDGAMEEEEK
QVENGKKEEERGREAEGEREADKTEPEMGDGEKEKDAKEGTEEGQREGEMEGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQTGGPHSNQAA
SAAPPQGPSASQPAPSTPAPQAAPSPAPPASSAPPPESQPAAGTHTSSPCPPGQPPAPHS
SSSTTPVHHGELKEPSAPHQGESLHPSAPVPAPQ
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatattttgaagcgtctgacacc
gtttcccagtttgataatgtccgcgtctggctgggaaagaattataaaaagtacatccag
gctgagccccccactaataaatctctgtccagcctggtggtccagctgctccagttccag
gaggaggttttcggcagacatgtcagcaatcctcccctcacaaagctgccgatgaaatgt
ttcctagacttcaagtcaggcggggctctgtgccacattctggctgctgcctacaagttc
aaaagtgaccaaggatggcgcaggtttgacttccagaatccgtcgaggatggaccgaaat
gtggagatgttcatgaccattgagaagtccttagtgcagaacaactgtctgactcgaccc
gtcatctacctgagctctgacatagaaccaaagctgctcggaaaactgaaagacatcatc
aaaagacaccagggctccgtgactgaggacaaaacctccagctcccatattgtggtgcct
attccttccagtctggaggaagaggagtgggtgcgtcctgtgatgaagagagacaagcag
gttctgctccactggggatattttccagacagctatgacacctggatcccagccagtgag
atcgaggctgcagtggaggatcctcccagcccagaaaagcccagaaaggttcatgcaaag
tggattttagaccttgaccagtataacgagtggatgaatgaggaagactatgaggtggga
gagggctgtccaaagaggaagaggatctctgccaagacgctgacagatgaggtgacaaca
ccagatgagagaagggacaagaaacccggcagtgccaagaaaagaaagcgatcgccatca
ccttcaccaacccctccgcctcaagagagcaagaaaaaaaatacaaaaaaagggccgacg
accccgtacaccaagtctaaacggggtcagagggaggaggagcaggaggagctgtccaag
gatctggatgaagcctcacctgttcctgcatctgaagagggaaccacagcaaagacaaat
aacaccaagaaggattctgaatcgaccccagttaagggaggcactgatgtggatgaacaa
gaagacgagtcaatggagacaacgggaaaggaagaggaggagggcagtcccagtgtgaag
ggtgaaccggtgaagagttcagaccttcatgaggacaacgtgacggagcaaactcaccac
atcatcatccccagctacgccgcctggttcgactacaacagtgttcatgccattgagcgg
cgagctctgcccgagtttttcaatgggaagaacaaatctaaaacccccgagatttatcta
gcatacaggaacttcatgattgacacctatcgactgaaccctcaggagtatttgacctcc
accgcctgccgcagaaacctggcaggagacgtgtgtgccatcatgagagttcatgctttt
ctagagcagtggggactgatcaactatcaggtggactcagagagtcggcccacgcccatg
ggacccccgccgacctctcacttccacgtcctggcggacactccttcaagtctggtcccc
ctgcagcccaaaacatcccagacccccgccacccagccgatgatatcattcccagacaag
gtgaaggagaagcccacagatctgcaaaactttgggcttcggaccgacatgtacagcaag
aagactgggtctgctaagagcaagagtgcagcgagctctatgagggagtggacagagcag
gaaacactactactacttgaggggctggagatgtataaggatgactggaacaaggtctct
gaacatgtgggcagccgtacacaagatgagtgcatcctgcacttcctgcggttaccaatc
gaagacccatacttggaggacagctcgtctactctgggccccctggcctaccagcccgtt
cccttcagccaagcaggaaaccccgtcatgagcaccgtggccttcctggcttctgtagtt
gacccacgtgtggcctcagctgcagccaaatccgctctcgaggagttttcccggatgaaa
gaggaggttcctgcagcgcttgttgaggctcacgtacggcgggtggaggaagcggcgaga
gtgagcggccgacaggatcccctgtatggcctggagggaagcggcattgcaggcactggc
ctggaggagggagagaggcccgatgaaagcagcgatgaaagcaagagtgacagtcagttg
agtgaggagaaaagagatgctaaggagagtaaagatggagcgatggaggaggaagagaag
caggtggagaatgggaagaaagaagaagaaagaggaagagaagcagaaggcgagagagag
gcagataagacagagcctgagatgggtgacggtgagaaggagaaggatgctaaggaggga
acagaggagggacaaagagaaggagagatggaaggagagaggaaggctaaagttgagcgc
gatgtgggagagggaaacctggcaactgctgctgcctccgcgttagcagctgctgccgtc
aaagccaagcatttagctgcagtggaagagaggaagatcaaatctttggtggctctgctg
gtggagacccagatgaagaagcttgagattaaactgcgacactttgaagaactggaaact
atcatggacagagagcgggaggctctggagtaccagcggcagcagctgctggctgaccgc
cagtccttccacatggagcagctgaagtacgctgagatgagggcccgccagcagcacttc
cagcagatccagcaccagcagcacagccagaccggaggccctcactccaaccaggcggcc
tcggctgcaccgcctcaaggccccagtgccagtcagccagctcccagcacaccagctcct
caggcggcccccagtcctgccccaccagcttcttctgccccgccccccgagtcccaacct
gcagcaggcactcacacgtcatctccctgccctccaggccagcccccggcccctcactcc
agctccagcactacacccgtacaccacggtgagttaaaagagcccagcgctcctcaccaa
ggtgagtcactccacccatcagctcctgttcctgcaccacagtga
DBGET
integrated database retrieval system
