Xiphophorus hellerii (green swordtail): 116710301
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Entry
116710301 CDS
T07363
Name
(RefSeq) laminin subunit beta-4-like
KO
K06245
laminin, beta 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116710301
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116710301
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMB1
LAMININ_IV_B
LAMB4
ATG17_like
Laminin_II
DUF7630
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
116710301
NCBI-ProteinID:
XP_032405180
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All DBs
Position
2:complement(20999043..21023382)
Genome browser
AA seq
1779 aa
AA seq
DB search
MILIFVFVCLPAVKPQDLQDQCPGGSCHPQLGDLMVGREAQLSASSTCGVDGPQNYCIVG
YLEGEKKCFTCDSRLPFSPQGNPQSHRIENVITTFDSDRRLKWWQSENGVHQVSIQLDLE
TVFQFSHLVLTFKSFRPAAMLVERSKDFGRSWKVFRYFADDCSLHFPSVPAEPASFIDDV
VCDRRYSGPEPSAGGEVVLKALDPVFEIDDPYAPNIQELITLTNIRVNFTRLFTLGDTLL
ARRRRDPQEKYYYSLYSMVVQGSCFCNGHASRCVPVDGGRGDVFTQSDMVHGRCVCQHNT
AGENCERCQPFHNDSPWKPGGETTPNICRRCNCHGHSDSCHFDAARYEETGGASGGVCDD
CRHDRTGPQCERCRPFLYQDPQRALEDPHACIPCDCDPAGSHSGGLCDASSGRCLCKENV
EGQRCDRCKHGFFNLRSDNPAGCEVCRCHGLGSVGPCDPLTGSCKCEPMATGLLCDHCVA
GFWGLGNSVFKCSPCDCDVGGASSNMCSSEDGQCSCLPNMVGRRCSDPAPGYFLPSLIYF
LYEAELAAQLTGGSSSPTPSPLPVFPSSSPLVNPALLPSCEQYFRRQGYDFRISNGKVIL
IRRPRHLTRRRRRQNTNPLNRGPLQILPHQGSPEQSGTGLGLVRVTEGVGLRFTVDNLPT
SMEYQLVIRYESESVTDWVARVNIITLSPGDGGCSDDPPSGSLTLILPRSSRLSVLDSRV
CLNARGRYYVEIFFDRQQRSDYAPLLVDSMGLVQSFYSVQDFCSQSDFDSFSHFRCVGLD
VYLGSQESLPKICEGLIKSLSARIHNGAVACTCNVIGSLGSGCSTLGGLCDCKPSVIGRC
CDACAPLTFGFGPEGCKRCECDPQGSLSEACDPSGGQCACRPRVSGRRCDRCESGFWGFP
LCQPCDCNGLSETCDGWTGQCVNCREHSSGLHCDRCVEGYYGNPVSRQPCQPCLCPDILS
SGRFFASSCRYDPQSVRVSCSCREGHTGERCDRCSSGFYGDLRLPGAVCRACSCNNNIDP
DDSDACDGTTGECLRCLHYTTGPRCQFCKPGYYGNALQHNCKECSCDRRGTKATLCPLES
PCFCNRETGQCPCRTGVVGNLCDECEDGFWNLDGASGCQPCSCDPSNSVSNICDKVSGQC
PCRPEFGGRQCDECGENYFGNPNLQCFSCDCNLEGTQRPSCDPETGECICRTGVTGILCD
ECTPGYSSEFPACEKCHECMVLWSENVTDVQRAAQRMRTFILLHGNTQHSTHSQYWQRML
EIHSRLDSFGNMTGFSLPKLEKVEKLYMKIRKMKDAVDTNIILIDPSVLLNNEINNINVE
FQKMLKNLKDKLIKDPNKKETQPVEEMLQEIQKLHKTFMSDEKRVRNSSKAVEDSMDTRW
ETRRKLSMWSSREDLATLEKKVKELNMRQLNQKVCGQPDPEDCSGCPGGQICDGAVPHAQ
KASETAEKVKERLIKFPSSLDESKKKISDVQQVAQDTKDQAQDLQRQISDITKSVEREKN
KTRELIQRVKQYLMDEMVPPGDIEKMANAVLRIQLPRSPAEIQSMINEINKLLNNKFQED
LKKLQDEAKTAQELLQKATEVKEQTKNINVKDILGDIIAADTAQSKANDDLEVANKDRDD
ANDRIQEMENKLNDIEDKLMNQTVGLLEESEALKNKTEQNREMAKEARETAESALTNISN
DRELQGVQEQFELLKQKHLNKTLEDGAADRLQKILKEIEDMQRQMEDRLQQIEDVEQKIQ
LLIQRKEEKIVEVADLLNTVESLQKEIISKAQYYVTCSS
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcatctttgtttttgtttgtctcccggcggtaaaaccccaggacctccaggac
cagtgccctggcggctcctgtcaccctcagcttggtgacctgatggtgggacgggaagcg
cagctctcagcctcgtccacctgcggtgtggacggaccccagaactactgcatcgttgga
tacctggagggggagaaaaaatgtttcacatgtgactcccgactgccgtttagtccccaa
ggcaacccacagagccatcgtatcgagaacgtcatcacaacgtttgactctgacagacga
ctgaagtggtggcagtctgagaacggagttcatcaagtcagcatccagttggacctggag
actgtcttccagttcagccacctggtcctcaccttcaagagcttcaggcctgcagccatg
ctggtggagcgttcgaaggattttggacgaagctggaaagtttttcgctactttgcagac
gattgttcccttcattttccttcagttcctgcagaacctgccagcttcattgacgatgtt
gtctgtgacagaagatactctggaccagaaccatccgcaggtggagaggtggtgctaaaa
gctctggatcctgtctttgaaatagatgacccatatgctccaaacattcaagagctgatc
accttgacgaatatccgtgtgaacttcactcgtctcttcacgcttggtgacacgctgctg
gctcgcagacgcagagatcctcaggagaaatattattactcgctttacagcatggtggtt
cagggaagctgcttctgtaacggacacgccagccgctgtgtccctgtggacggaggacgt
ggggacgtcttcacccagtctgacatggttcacggtcgctgtgtctgtcagcacaacaca
gctggggagaactgtgagagatgtcagccgtttcacaatgactccccctggaagcctgga
ggagaaactacacccaacatctgcaggaggtgtaactgtcacggtcactcagactcatgt
cactttgatgctgctcgctacgaagagaccggaggtgcaagtggcggcgtgtgtgacgac
tgccgccatgacaggacggggcctcagtgcgagcgctgtcgacctttcctgtatcaggac
ccgcagagggcgctagaggaccctcacgcctgcataccgtgtgactgcgaccccgccggc
tcccacagcggcggtttgtgtgatgcttcaagcggtcggtgtttgtgtaaggaaaacgtg
gagggtcaacgctgtgatcgctgcaaacatggtttcttcaatttgagatcggacaacccg
gctgggtgtgaagtctgcaggtgccacggcttgggaagtgttggaccatgcgatccgctt
acagggagctgtaaatgtgagccaatggccaccgggctgctgtgtgatcattgtgtggca
ggtttctggggtttgggaaactcagtcttcaaatgttcaccctgtgactgtgatgttggc
ggagctagcagcaacatgtgttcttcagaggatggacagtgttcctgtttacccaacatg
gtgggccggcgctgctctgaccctgcacctggttacttcctgccttcgctcatctacttc
ctgtatgaggcggaactcgctgcacagctgacaggagggagttcctcccctactccttct
cctcttcctgtttttccctcttcctctccactggtgaatcccgcccttttgccttcatgt
gagcagtatttcagacgtcagggctatgacttccgaatctccaatggaaaagtgattttg
atacggaggcctcgtcatctcacccgtcggaggagacggcagaataccaaccctttgaac
cgggggcccctgcagatccttccccaccagggctcacctgagcagtcaggaactggtctg
ggattggtcagagtgacagagggggtggggcttagattcactgtggacaacctgccaaca
tcaatggagtaccaactggtgatccgctatgaatctgagtctgtcaccgattgggtggcg
agagtgaacatcatcacgctgtcaccaggcgatggaggctgcagtgacgaccctccatca
ggaagtctgacactgatcctccccagaagctccagattaagtgttctggattcccgggtg
tgtctgaacgccagaggtcgatactatgtggagattttctttgacaggcagcaaagatca
gactacgctcctctgctggtcgactcgatgggactggttcagagtttctattcagtccaa
gacttctgctcccagagtgactttgactctttcagtcactttcgctgcgttggattggac
gtgtatctcggttctcaggagtcacttccaaaaatctgcgaaggactgatcaagagtctg
tcggcacgcatccacaacggagctgtggcctgcacgtgtaacgttattggttctcttgga
tcgggatgcagtacgctgggcgggttatgtgattgtaagcccagcgtgatcggccgttgc
tgtgacgcttgtgcacctctgacctttgggtttggacctgaaggctgtaaacgatgtgag
tgcgaccctcaaggttctctgtcggaggcgtgtgacccgagcggaggtcagtgtgcgtgt
cgcccccgggtatccggtcgacgctgcgatcgatgcgaatctggattctggggattcccg
ctgtgtcagccttgtgactgcaacggcctgtcggaaacctgcgatggatggaccggacag
tgtgtgaactgcagggagcacagcagcgggctgcactgtgacaggtgtgtggagggttac
tatggcaacccggtctccaggcaaccctgtcagccctgcctgtgccctgatatcctgagc
agcggacggttcttcgcctcttcctgtcgatacgacccgcagtccgtcagagtgagctgc
tcctgcagggagggacacacaggtgaacgatgtgacaggtgcagttcgggtttctacggc
gacctgaggttgccaggtgctgtctgcagggcgtgctcctgcaacaacaacatcgacccg
gacgacagcgatgcctgcgacggcacaaccggagaatgtctccgctgccttcactacaca
acgggtccacggtgccagttctgcaagcctggttactatggcaacgccctgcaacacaac
tgtaaagaatgctcctgtgatcgccgggggaccaaggcgactctatgtcccctggagagc
ccctgcttctgcaacagggagacaggacagtgtccctgcaggacgggtgtggtgggaaat
ctctgtgatgaatgtgaggacgggttctggaacctggacggagcgtcggggtgtcagccc
tgcagctgtgacccgtctaactccgtctctaacatctgcgataaggtgtcgggacagtgt
ccctgtcgtcctgagtttggaggaagacagtgtgatgaatgtggagaaaactattttggg
aatccaaacctgcagtgcttttcttgtgactgtaaccttgagggaacgcagcgcccgtcg
tgtgaccctgaaactggtgagtgcatctgtcggactggcgtcaccggtatcctctgtgac
gagtgcactccaggctacagctcagagtttcctgcctgtgagaaatgccatgaatgcatg
gttctgtggtccgaaaacgtcactgacgtccagcgagccgcccaaaggatgaggacgttc
atccttctccatggcaacacccagcattccactcacagtcagtactggcaacggatgctg
gagattcactccagactggacagctttggcaacatgactggtttctctctgccaaagctg
gagaaggtagagaaactctacatgaagattaggaagatgaaagatgctgttgacaccaac
ataattctgatcgacccgtctgtcctccttaacaatgaaatcaataacattaacgtagag
tttcagaagatgctaaaaaacttgaaggataaactcatcaaggatccaaacaagaaagaa
actcagccagtggaagagatgctgcaggagatccagaagcttcataaaaccttcatgtca
gacgaaaagcgggtgagaaactccagtaaagctgtggaggactccatggacaccagatgg
gagactaggcgcaaactgagcatgtggagcagcagagaagatctggcaactctggagaag
aaggtcaaggagctcaacatgcgccaactcaaccaaaaggtctgcgggcaaccggatccg
gaggactgctctggatgtcccggaggtcagatctgtgatggagctgttcctcatgcccag
aaagcttctgagacggcagagaaagtaaaagagcgactcatcaaattcccatccagcctg
gacgagtcaaagaaaaagatcagtgatgtccagcaagtggctcaggacaccaaagaccag
gcccaagacctgcagcgccagatcagcgacatcaccaaatcagtggagagagagaaaaac
aaaaccagagagctcatccagagagtcaaacaatatctgatggatgaaatggttcctcca
ggtgacattgagaaaatggcgaacgctgtcctgaggatccagctaccacgatcacctgct
gagatccaatcgatgatcaatgagatcaataaacttttgaacaacaaattccaggaggac
ctgaagaagctgcaggatgaagccaaaacagctcaggagcttctgcagaaagcgacagaa
gtcaaggagcaaactaaaaacatcaacgttaaagacatcctcggtgacattattgctgca
gacacagctcagagcaaagccaacgatgacctggaggtggcaaataaggacagagacgac
gccaatgaccgaatccaagagatggaaaacaaactgaacgacattgaggataagctgatg
aaccagactgtaggtctgctggaggagagtgaagctctgaaaaataaaacagagcaaaac
agagagatggcaaaagaggccagagaaactgctgagtcagcattgaccaacatttctaat
gacagggagctgcaaggagttcaggagcagtttgagcttttaaagcagaagcacttgaac
aaaacacttgaagacggagccgcagatcgactgcagaaaatcctgaaggagatcgaagat
atgcagagacaaatggaggacagactccaacagatagaagacgtggagcagaagatccag
ctgctgatccagaggaaggaggagaaaatagtcgaggtggccgatctgctgaacacggtg
gagtcacttcaaaaggaaatcatctctaaagctcaatattacgtcacatgttcctcataa
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integrated database retrieval system