Xiphophorus hellerii (green swordtail): 116710339
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Entry
116710339 CDS
T07363
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116710339 (chd5)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116710339 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
116710339
NCBI-ProteinID:
XP_032405228
LinkDB
All DBs
Position
20:complement(8535197..8588200)
Genome browser
AA seq
2001 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDETERNTVPLTALASFFSDDDSLKKQKKKKPKKIK
EGKIPKVKKRKKEGGIQPRLDSDLEEISEVEEERERPEIGSESESSAYGPTKKKKKKPRE
KKERKPRKKKRDEDDDEDDDDDGNMKEPKSSGQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSISQLSSQQGTLKKAKTKEGKGPGVRKKSKTLKEVKKKPKPKKTKSKTGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGATKKKARRGRRKRKKEDGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEEP
AGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWMWGEPPLPAEPPAGPDGKPFDPLTKPPLKGRPEREFFVKWAGLSYWHCSWVS
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAAMEERFYRYGI
KPEWMIIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEADDFDVPEYEIHKAFYWDHREQ
ILGEDQRPLVVRKGKKLKENYPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPDFYVVTYTGDKDSRAIIRENEFTLEDSTVKSGRKVFRMKKDSPIKFHVLLTSYE
LITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDEMEAARTMGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTEIQ
NMNEYLSSFKVAQYVVKEEDEEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDATQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLK
NEKDKPLPPLLARVGGSIEVLGFNTRQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
REFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPVATQPSTPVPPEKAESLVRNAEDKET
TETDGKKLSEQEQAPIAELASVPEKAADSDETKATSEEKTGDERNRTKSPMTKAEPPAYP
KESAFKPAELPSSHTSPKTDPCKEAEKSSEKGEAGSPREKTEDKENKPDDVKSEDALEGR
LNGDKDTLDELDESRREDKNGFKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWH
RRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLLE
QALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVL
HKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPFS
QGGFGCSQMYSSGFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSLDSF
RDGATPELKSGKASDVICIED
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaggacgacatggattttgaagacgat
atgccagatgaagatgacgaaactgagcgcaacaccgttcccctcacggcccttgcaagc
ttcttctctgatgatgactccctcaaaaagcagaagaagaaaaagcccaaaaagataaaa
gaggggaaaatacccaaagttaagaagaggaaaaaagagggaggaatacagccaagactt
gacagtgacctcgaggagatttcagaggtagaggaggaacgtgaacggccagaaattggc
tctgagagcgaaagcagtgcatatggccccaccaaaaaaaagaagaaaaaacccagggag
aaaaaagaaaggaagcccaggaagaagaagagagatgaggatgacgatgaggatgacgat
gatgatggtaacatgaaagaacccaaatcctccggccagctgatgcaagaatggggtctt
gaggatgttcagtatgggttcacagaggacgactacaaaacaatcaccaattacaaggct
ttcagccagttcctcaggcccctcattgccaagaagaatccgaagattcccatgtcaaag
atgatgacagtgttgggagccaagtggcgtgagttcagtgccaacaacccgttcaaaggg
gcatctgccaccgctgtggccgctgcggtggccgctgcggtggaaacggttactgtagct
cagccaacatctgtcagcatcagccagctgagctctcagcagggcacattaaaaaaagcc
aaaaccaaagaaggaaaagggccaggagttagaaagaaaagcaagaccttaaaagaagtg
aagaagaaaccgaagccgaagaagaccaaatcaaaaactggtcaaagtgggaagaagaag
aaagcatcctctagcgaggaggactttctggaggagtcagactttgatgacatcagtatc
cacagtgcctctgtgctttctgatacctctggggccacaaagaaaaaggcccgacgtggg
cggagaaaaaggaaaaaggaggacggcgatggctatgagactgaccaccaggactactgt
gaggtttgccagcagggaggagaaattatcctctgtgacacttgtccaagagcctaccac
cttgtctgtctggaccccgagctggaaaaggcacctgagggaaaatggagctgcccacac
tgtgagaaggagggaatacaatgggaggccaaagacgaagaagaggaggaggaggagcca
gcaggtgaggaagaggatgaccatatggagttctgcagagtttgcaaggatggaggggaa
cttctttgttgtgacacctgtccatcatcctaccacatccattgcctcaatccacctcta
cctgagatcccaaacggggagtggttgtgtcctcgctgcatgtgtcctcctctcaaaggt
aaagtgcagaagatcctccactggatgtggggagaaccgccgctgccagctgagccaccc
gcaggccctgatggcaagccatttgatccactaaccaagcccccgctcaaggggcgccca
gagagggaattctttgtaaagtgggctggcctttcatactggcactgttcctgggtcagc
gaactgcagttagagctgtaccacacagtcatgtatcggaactaccagcggaagaacgac
atggacgagcccccgccatacgattacggctcaggagaggaggagctgaacaatgagaag
aggaagagcaaagacccccagtacgctgcaatggaggagcgcttttaccgctacggcatt
aaaccagagtggatgatcatccaccggatactcaaccacagttttgataaagatggtgat
gtgcattacctaatcaagtggagagacttaccctatgatcaatgcacttgggaggcagat
gattttgacgtcccagagtatgagatccacaaagctttttactgggaccacagagagcaa
attttaggagaggaccaacgccctcttgtggtaagaaaagggaagaaactaaaagagaac
tatccaaaaagggaagtccctcctgatgcccccatcatagatccaaccatcaaatttgag
caccagccctggtatattaatgccacagggggaacgctgcacccataccagctggaaggt
ctgaattggttaagattttcctgggctcagggaacagataccatcctggcagatgaaatg
ggcctcggaaaaacggttcagacaatagtctttctctactcactgtataaggagggccat
tccaaggggcctttcttggtgagtgcacctctgtctactatcatcaattgggagagagaa
tttgagatgtgggctccagatttctacgtggtgacttacaccggagacaaagacagcagg
gcaattatcagagagaatgaattcaccttggaagacagcacagtaaaatctggacgcaag
gtcttccggatgaagaaagactctcctatcaaatttcatgtgctgctgacatcttacgag
ctgatcactatagatcaagccattcttggctccatcacctgggcctgcctagttgtagat
gaggctcacagactgaagaacaaccaatcaaagtttttcaggattcttaatgggtataag
atctactacaagctgctgctcactggtactcctctgcagaacaacctggaggagcttttc
catctacttaacttcctcaccccagaccgcttcaacaacctggaaggcttccttgaggag
tttgcagatatctctaaagaggaccagatcaagaagctccatgacctccttggacctcac
atgctcaggcggctgaaagctgacgtcttcaagaacatgccggcgaagacagagctcatt
gtcagagtggagctcagccccatgcagaagaaatattacaagtttattttgacacgaaat
tttgaggctctgaactccaaagggggaggaaaccaggtgtccctgctcaacattatgatg
gacctgaagaagtgctgtaaccacccctacctgttccctgttgctgctgtggaggctcct
gttttgcctaacggttcttatgatggcaacctgctggtgaagtcttcaggaaaactaacc
ctgcttcaaaaaatgctgaagaaactcaaagatgaaggacacagggttcttattttctct
cagatgacaaagatgttggatctgcttgaggatttcctggagtttgaaggctataaatat
gaacgtattgatggggggattactggaggcttacggcaggaagcaattgatcgtttcaat
gctccaggggcacagcaattctgctttttgctttcaacgcgagccggaggtctcggcatc
aatttggctagtgcagacaccgtcatcatctacgactctgactggaatccacacaatgac
atccaagcttttagcagagcccaccgaattggccaaaacaagaaggtgatgatctatcgt
tttgtgactcggggatctgtggaggagagaatcactcaggtggcaaagagaaaaatgatg
ttgactcacctggtggtgaggcccggcctgggctccaaaactggttccatgtccaagcaa
gaactggacgacatcctcaagtttggaactgaggagctttttaaggatgagatggaagca
gcacgaaccatgggagataacaaagatggtgaggagggcaacgtcattcactacgatgac
gatgccatttcaaagctactggaccgcagccaagatgccactgaggacacagagatacag
aacatgaacgagtacctgagctcgttcaaggtggcgcagtatgtggtgaaagaagaagat
gaagaggaggaggtagagcgagaaatcatcaagcaagaggagaatgtggaccctgattac
tgggaaaagctcctccgccatcattatgagcagcagcaggaggacctggcccgaaatctg
ggaaaaggcaaacgcattcggaagcaggtcaactacaacgacgcgactcaggaggaccaa
gaatggcaggatgatctttcagacaatcaatcggagtattccgtggggtccgaagatgag
gacgaagattttgaagagaggcccgaaggtggacgcaggcagtctcgtcgacaacttaag
aatgagaaagacaaacctctaccccccttactggcacgtgttggaggcagtatagaggtc
cttgggttcaacactcgccagaggaaagctttcctcaatgccatcatgcgctggggcatg
cctcctcaggatgctttcaactcgcactggctggtccgggaccttagagggaagagcgag
cgcgagtttagggcctatgtgtctctgtttatgagacatttatgtgagccaggtgcagac
ggagcggagacctttgcggatggagtcccccgtgagggcctgtctcgacagcatgttctc
accaggatcggagtcatgtcgcttgtcaggaaaaaggtgcaggagtttgaacatgtaaat
gggaagctgagctctccagatctgattcccattggaatggagctgaagaaactgactgaa
agtgtgtcttcagatcccaacaccccagtgccagccagccctgttgctacacagcccagc
acccccgtcccaccagagaaagctgagtctttggtacgaaatgctgaagataaggagact
acagagacagatggaaagaaactttctgagcaggaacaagctcccattgcagagctagca
tctgtacctgagaaggctgctgacagtgacgagacgaaggcaacctcagaagagaaaaca
ggagatgagaggaacagaaccaaatcccccatgacaaaggccgagccacctgcctaccca
aaagagtctgctttcaagccggcagagctgccatctagtcatacctcacctaagacggac
ccctgcaaagaagccgagaagtcctctgaaaaaggagaggctggttctcctcgggaaaaa
actgaagacaaagaaaataagccagatgatgtgaagagtgaagatgcattagagggtcga
ttgaacggagacaaagacactcttgatgagctggatgagagcagaagagaggacaaaaat
ggattcaaagccaagttcatgtttaatatcgcagatggaggttttacggagttgcacacc
ctgtggcaaaccgaggagcgagcggctctttcgtctggaaaaatgcatgacatctggcat
cgtcgccatgactactggctgcttgctggcatcgtaacacatggctatgctcgctggcaa
gacattcagaacgatccccgatatgctattctgaatgagccattcaaaacagagatgcac
aaggggaactacttggagatgaagaacaagttcctggcgcggcgctttaagttgttggaa
caggcattggtgattgaggagcagttgcgacgggcagcttacctcaacatgacccaggac
cccagtcaccctgccatggctctcaatacgcgctttgctgaggtggaatgtttggccgag
tcccaccaacacctctccaaagagtctctggctgggaacaagcctgccaatgctgtgctt
cacaaagtgctgaaccagctagaggaacttctgagtgacatgaaagcagatgtgacacga
cttcccaacatgctgtccagaatcccaccagtgtcggctcgtttgcaaatgtcggaaagg
agcatcctgagccgcctcaccagcagaggcagcgaacctccaccacagcagccttttagc
cagggaggctttggctgctctcagatgtacagcagcggttttggtgggggattcagagga
ccaggcggacagcctatggtcaactacagccagatgccccttggaccttacgtcagcgtg
tcatctaatggccccccgcctcctacaagccatttggacaagaaatcacttgactcgttc
agagacggggccacgcctgaactcaagtcaggcaaagccagtgatgtcatctgtattgag
gactag
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integrated database retrieval system
