Xiphophorus hellerii (green swordtail): 116710574
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Entry
116710574 CDS
T07363
Symbol
shmt2
Name
(RefSeq) serine hydroxymethyltransferase, mitochondrial
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe00260
Glycine, serine and threonine metabolism
xhe00630
Glyoxylate and dicarboxylate metabolism
xhe00670
One carbon pool by folate
xhe01100
Metabolic pathways
xhe01200
Carbon metabolism
xhe01230
Biosynthesis of amino acids
xhe01240
Biosynthesis of cofactors
xhe04981
Folate transport and metabolism
Module
xhe_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
116710574 (shmt2)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
116710574 (shmt2)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
116710574 (shmt2)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
116710574 (shmt2)
Enzymes [BR:
xhe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
116710574 (shmt2)
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Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
116710574
NCBI-ProteinID:
XP_032405603
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Position
20:complement(11355603..11386878)
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AA seq
501 aa
AA seq
DB search
MLSFAFKQLTRPLCQQPSIRLSVRFQQSHAATRTVDEDGSWTGQESLAEDDPEMWALLRK
EKDRQCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPGRRYYGGAEVVDQIELLCQKR
ALEAFDLDPEKWGVNVQPYSGSPANFAAYTAVLKPHDRIMGLDLPDGGHLTHGYMSDVKR
ISATSIYFESMPYKLNPGTGLIDYEQMEMTAKLFRPRLIIAGTSAYARLIDYARIKKLCT
GINAYLLADMAHISGLVAAKAVPSPFEHSDLVTSTTHKSLRGSRAGLIFYRKGIHSVDKK
GKEIMYDLEDKVNFAVFPSLQGGPHNHAIAGVAVALKQAQSPMFREYVAQILKNAKAMAA
ALLSKGYTLVSGGTDNHLVLVDLRPKGIDGARAERVLELVSITANKNTCPGDKSALTPGG
LRLGAPALTSRQFKEDDFVQVVEFMDEGFKIALDVKKKTAKLQDFKNFLLQDPETVARIA
DLRHRVEAFARPFPMPGFCDH
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcattcgccttcaagcagctcacacggcccttgtgccagcagccctccattcgt
ctcagtgtacggttccagcagtcccatgcagccacccgaacggtggatgaagatggatcc
tggaccggacaggagagtctggctgaggacgacccagaaatgtgggctctgctgcggaag
gagaaggacagacagtgccgtggtttggagctcattgcatctgagaatttctgcagccga
gcagctctggaagctcagggctcctgtctgaacaacaaatattctgaaggctatccaggg
agaagatactacggtggagcagaagtggttgaccaaatcgagcttctgtgtcagaagcga
gctttggaggcctttgacctggacccagagaagtggggcgtcaacgtccagccatactcg
ggttctcctgctaactttgctgcctacacagctgtactcaagccgcatgaccgcatcatg
ggcctggacctgcccgatggtggacatctgacccatggctacatgtcagatgtgaagagg
atctctgcaacatcaatctactttgagtccatgccttataagctaaaccctggaacggga
ctcatagactatgagcagatggaaatgacagccaagctgttccggcccaggctcatcatc
gctggcaccagcgcctacgctcgcctcattgactatgcccgcatcaagaagctatgcaca
ggtattaatgcctacttgctcgcggacatggctcatattagtggcctggtagctgcaaag
gcagtgccttcaccgtttgaacattctgacctggtcacttccaccacacacaagtccctc
agaggatccagggctggcctcatcttttaccgtaagggcatccactcagtggacaagaaa
ggaaaagaaatcatgtacgacctggaagacaaagtcaactttgcagtgtttccctccctg
cagggtggacctcataaccacgccattgctggagtagcagtggctcttaaacaggctcag
tctcctatgttcagggagtatgtagcccagatactaaagaatgcaaaggctatggctgca
gctcttctcagcaaaggctacactctggtatcaggtggaactgacaaccacctggttctg
gtggacctgcggccaaaaggtattgacggcgctcgagctgaaagagtgctggagctcgtg
tcgatcacggccaataagaatacgtgtcctggagacaagagcgcattgacccctggaggc
ctcaggctgggtgctccagctctgacttccagacagttcaaagaagacgactttgtgcag
gttgtcgagtttatggatgagggatttaagatcgctttggatgtcaagaaaaagacagca
aagctccaggacttcaagaacttcctcctccaggacccggagacggtggcccgcattgca
gatctgcgacaccgggtggaggcttttgccaggccgttccccatgcctggcttctgcgac
cattag
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