Xiphophorus hellerii (green swordtail): 116710730
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Entry
116710730 CDS
T07363
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
116710730
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116710730
Cell adhesion molecules [BR:
xhe04515
]
Cadherins
Major cadherins
116710730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Stevor
Motif
Other DBs
NCBI-GeneID:
116710730
NCBI-ProteinID:
XP_032405807
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All DBs
Position
20:complement(25898354..26205802)
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AA seq
928 aa
AA seq
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MIAGCILLACTVLVGASSGSRAGQPLKPPCRPGFSQNFYTVIVPRDLLHGQSILKDTTLS
SKRVKFEDCQHSREVGFVSSDPNFSVRPDGSLYTEQEVANLSEPVQFMVTARGLHDPHIW
ETTVKLALAGHLHPLPLTKIGFEEMLSRVWESQPRVIKFSRRHQRGSSANSLRRQKRDWV
IPPINVPENARGPFPNMLVRIRSDQDRDPGIRYSITGAGADQPPSGIYNIDPISGNMFVT
QPLDREERASFHLRAHAVDMNGNQVENPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSKP
GSSVMQVTATDSDDPTTANGMVHYRILSQTPHSPIPNMFAIDSKTGDINTVAAGLDREKV
SQYTIIVQATDMEGNLNFGLSNTATALISITDINDNPPELTAGTFSGEVPENKVNVVVTN
LTVVDRDQPHSPNWNAVYRIVSGDPLGHFTVRTNPITNEGMLTVVKPVDFEMNRAFVLTV
VVSNQAHLASGIQSSLQSTAGVTISVQDVNEPPVFPVNPKTIRFEEGVPAGTTLTVFAAQ
DPDHFIHQIVRYSKLSDPANWLKINRTNGQITTMALLDRESMYVKNNMYEATFLAYDNGK
SGFPQASGTGTLQIYLIDVNDNAPVLIPKEAQICERARPISRINITASDADAEPNVGPFV
FELPSFPASIRRNWTISRLSGDYAQLRLKIPYLEAGVYVIPVIVSDSGNPPLSNRSMIRI
KVCPCDNNGDCSATGAVAAAGLGTGAIIAILMCIIILLSMVLLFVVWMKRREKERQAKPL
LIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESLDHIISKPTGVRRVDERPVIAES
QYPVRPSVPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSTSS
GDQDYDYLNDWGPRFKKLADLYGGGADD
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgatcgctggctgcatcctgttggcgtgcaccgtactcgtgggcgcatcctcggggagc
agggcgggccagcccctgaagcctccctgcagacccggcttctctcagaacttctacacg
gtgattgtccccagagacttactacacggccagagcatcctcaaagataccaccctgtcc
agcaagcgtgtgaagtttgaggattgccaacacagcagagaggtgggctttgtcagcagc
gaccccaacttcagcgtgaggcccgatgggagcttgtacacggagcaggaggtggccaac
ctctccgagcccgtccagttcatggtgacggcgcggggactgcacgacccgcacatctgg
gagaccaccgtgaagctggccctcgccggacatcttcaccctctaccgctaacaaagatc
ggctttgaagaaatgctgtcacgggtgtgggagtcccaacccagggttatcaagttctct
cgaagacatcagagaggttcctctgcgaacagcttgaggcggcagaagagagactgggtc
atcccacctatcaacgttcctgaaaacgcccgaggacctttcccaaacatgcttgtcagg
atccgctcggatcaggatagggaccccggcatccgctacagcatcacgggcgccggcgcc
gatcagcctccgagcggaatctacaacatagaccccatcagcggcaacatgttcgtcacc
cagcccctggaccgcgaggagagagcctccttccacctgcgagcccacgcggtggacatg
aacgggaaccaggtggagaacccgatagacctgtacatctacgtgatcgacatgaacgac
aacaggcccgagtttcaaaaccaggtttacaacggctcagtggctgaagggtccaaacca
ggctcgtctgtgatgcaagtgacggccacggattcggacgaccccaccacggccaacggc
atggtgcactaccggatcctctcgcagaccccccacagtcccatccccaacatgtttgcc
atcgacagcaaaacgggagacatcaatactgtggccgccggactggacagggagaaagtg
tcgcagtacaccattatcgtccaggccacggacatggagggcaatctgaactttgggctc
tccaacacggccacggcgctcatatccatcaccgacatcaacgacaacccaccagaactg
accgccgggacgttttccggtgaggtcccggagaacaaggtgaacgttgtggtaaccaac
ctgacggtggtggaccgggatcagccccacagccccaactggaacgctgtctatcgaatc
gtcagcggcgacccgttgggacacttcaccgtccgcacaaatcccatcacgaatgaggga
atgctcacggtggtcaagcctgtggatttcgagatgaaccgcgccttcgtgctgacggtg
gtggtgtccaatcaggcccacctggcgagcggcatccagtcctcgcttcagtccacggcg
ggggtcaccatctctgtccaggatgtcaacgagccgcccgtcttccccgtcaaccccaag
acaatccgtttcgaggagggcgtgccggcggggaccacgctcacagtgttcgcagctcag
gaccccgaccacttcatccaccagatcgtcaggtactcgaagctctccgacccggctaac
tggctgaagatcaacagaaccaacggtcagattaccaccatggccttgctggacagggag
tccatgtacgtcaaaaacaacatgtatgaagccacgttcttggcgtacgacaatggtaag
tctggttttccccaggccagcgggaccgggacgctccagatctacctgattgacgtcaac
gacaacgctcccgtgctgatccccaaggaggcgcaaatctgcgagcgagcccggcccatc
tccagaatcaacatcacggcttcggacgccgacgccgagcccaacgtcgggccgtttgtc
ttcgagctgccttcgtttcctgccagcatccgccggaactggaccatctccagactgagc
ggcgactacgctcagctcagactgaagattccttacctggaggcaggcgtctacgtgatc
ccggtcatagtgtctgactcagggaacccgcctctgtccaaccgctccatgatcaggatc
aaagtgtgtccctgcgacaacaacggggactgcagtgccacgggggccgtggcggccgct
ggcctcggcaccggagccatcatcgctatcctcatgtgcatcatcatactgctgagtatg
gttctgctgttcgtggtgtggatgaagcgcagagagaaggagcggcaagcgaagcccctg
ttgatcgacccagaggacgacgtcagagacaacatcctgaagtatgatgaagagggaggt
ggagaggaagaccaggactacgacctgagccagctgcagcagccggagtctctggaccac
atcatcagcaagccaacgggggtgcgccgggtcgatgagaggcccgtgattgctgagtcg
cagtaccctgtcagacccagcgtgccccacccgggggacataggagacttcataaacgac
ggtctgagggctgcagacaacgaccccaccgccccaccgtacgactccctgctggtgttc
gactatgaaggtagcggttcgaccgccggctccgtcagctcgctcaactccaccagctca
ggagaccaggactacgactacctcaacgactggggtccgcgcttcaagaagctggcagat
ctctacgggggaggagcggacgactga
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