Xiphophorus hellerii (green swordtail): 116710808
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Entry
116710808 CDS
T07363
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116710808 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116710808 (smarcd1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116710808 (smarcd1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116710808 (smarcd1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116710808 (smarcd1)
PBAF complex
116710808 (smarcd1)
GBAF(ncBAF) complex
116710808 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
116710808
NCBI-ProteinID:
XP_032405939
LinkDB
All DBs
Position
20:5185533..5201347
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AA seq
515 aa
AA seq
DB search
MAARGGFQSTPTAGGGGAMGPGPPVPGAAPGMGPGTPSGRMGPTSGAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQIQQVQQQQNRN
QHTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPR
LARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDFKTITDVVGNPEEERRAE
FYYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagagggggatttcagtcaacaccgactgctggtggcggtggagcaatggga
cctgggccaccggtaccaggcgcagcgccaggtatgggacctgggactccctctggaaga
atgggaccgacgtcaggcgcacagaaccacatgtaccgctctccgatgcccgggcctggg
tacccgagaccgggcatgcccccatccagccgtatgaccccgcaaggccccgccatgggc
ccaccgggttacggcagcagccccgtgtctcgccctgggatgcccggcgtgatggacccg
tcccggaaaagacccgctcctcagcagatccagcaggttcagcaacagcagaaccgcaac
cagcacacaaagaagaagaagatggctgataaaattctacctcagaggatcagagagctg
gtcccagagtctcaggcttacatggatcttctggcttttgagaggaagctggatcagacc
atcatgcgcaaacggctcgacattcaggaggccctaaaaaggcctataaagcaaaagaga
aagctccggatctttatatccaacaccttcaatcctgcgaagcctgatgctgaggatgga
gaaggcacagttgcatcatgggagctgcgtgttgaagggcgactattagaagatactgct
gtgtccaagtatgaagctaccaaacaaaaaagaaagttctcctccttctttaagtcactt
gtgatcgaattggataaagacctgtatggaccggataatcaccttgtggaatggcacagg
acagccactacccaggagacggatggtttccaggtgaagaggcccggtgatgtgggagtt
cgctgcaccgtcctgctcatgctggattaccagcccccccagttcaagctggacccccga
ctggcccgtatgttgggtatccacactcagaccagacctgtcatcatccaggctttgtgg
cagtacgtcaaaacacacaaactccaagatccgcatgagcgcgagttcatcaactgtgac
aaatacctccagcaaatttttgaaactcagcgaatgaagttttccgaaatcccacagcgc
ctgcatgctctgctgatgcctccagaaccaatcatcatcaaccatgtgatcagtgtggat
cccaatgatcaaaagaagactgcttgctatgacattgatgtggaggtggatgacacgctg
aagacacagatgaactcattcctgctctccacagcaagtcagcaggaaatagcaggattg
gataacaagatccatgaaactattgagaccatcaaccagctgaaaacccagagggagttc
atgttgagttttgccagggatcctcagggctttatcaacgactggcttcagtcccagtgc
agggacttcaagaccattacagatgttgtgggaaacccagaagaggagcggagagcagag
ttttactatcagccgtgggctcaggaggccgtgtgtcgctacttctactccaaagtccag
cagaggcggcaggagctggaacaggcgcttggaatcaggaacacttga
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