Xiphophorus hellerii (green swordtail): 116711171
Help
Entry
116711171 CDS
T07363
Symbol
myo5c
Name
(RefSeq) LOW QUALITY PROTEIN: unconventional myosin-Vc
KO
K10357
myosin V
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
116711171 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116711171 (myo5c)
04131 Membrane trafficking [BR:
xhe04131
]
116711171 (myo5c)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116711171 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xhe04812
]
116711171 (myo5c)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
116711171 (myo5c)
mRNA cycle factors
P-body specific factors
116711171 (myo5c)
Membrane trafficking [BR:
xhe04131
]
Others
Actin-binding proteins
Myosins
116711171 (myo5c)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
116711171 (myo5c)
Cytoskeleton proteins [BR:
xhe04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
116711171 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
AAA_22
Myosin_N
IQ_SCN5A_C
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
116711171
NCBI-ProteinID:
XP_032406449
LinkDB
All DBs
Position
2:7108882..7142217
Genome browser
AA seq
1744 aa
AA seq
DB search
MALSELYTKYNRVWIPDEGQVWKSAEITKDFHSGDNVLELLLEDGTVHLHPVDPSKPKLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESRIIYTYCGIILVAVNPYKQLPVYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSQTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQAENERNYHIFYQMCSCADSAEFKHLRLLSADEFRYTGMGGDITIDGVY
DKKDFEETRQTFSLLGLKEDFQSDVFKVLAAILHLGNVEIRSSGDDKSSAALSDPHLAAF
CDLLCVSAAELVRWLCNRRIVLVAETVVKPVPKERAAAGRDALAKQIYAHLFDCIITRIN
TALQVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLFNYLEANHLFEKP
RLSNEAFVIQHFADKVEYQCRGFLEKNRDALYEELVDTMGASKFSFLAHFFQEEEQSRAA
SKGVKVKSARPSVKPANKQLRTSVGDKFRSSLSLLMGTLNATTPHYVRCIKPNDEKLPFE
YDSGRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMSHVEADFNDKKQTCKNV
LQRLIQDPNQYKFGRTKIFFRAGQVAYLEKLRLDRLRGACVTIQKHVRGWSRRRKYLRIR
EAAIILQQYIRGKRTIRKMVTAETLKQGWAAVVIQRHWRGYCMRQIYHVVQMASITIQAF
TRGWMARKRYKKMIEEHKALVLQKYAKAWLARRRFQTMRRLVLNVQLSYRVQQLRKKTEE
QNKENRGLMERLTSLASSHSQTMEKLHSQEAQLEKLTNLKASLEEREKKAREEASMTINQ
LQRQFEELNTEKQNLEKKLEVSIKETKESFDQVKRNLLEEKENEVRLRKIAENNTEIQRH
DHEKELEILKEEIKRLKEDRVSLQRKVEDGAQVNSDLQEQVIQLTKHVKVIPELRRDLNN
LQNQKNNLDRKMKEQSEQTRAKTKEIVRQLLGGFIEEEKLLGLVPEDSEKIYELDDLQEA
FESLQKATRSGSYWENHQKEQRETYESQMEGLTLRVDHLQNENSKLQNLFQEKSNINEDI
RQEVSRLSSENSVIPELKLQVSELHRQKQELETVVKEQSSELAEKNMEISNILHKKITEE
SSQRRHFEEKARELEEIREELQVKIEELEEENEHLKRQQLMEGEVKRKLREETSQLTAEN
MDLEEQLDQKERWIKKLHSQIKCLEMSQKAKQTPALPKEYLGMLEYKREDEARLIQNIIT
DLKPKGVVVNVIPTLPAFILFMCVRHADYLNDDNKLKSLMNGIIQGVKKVVVAHHKDFES
LSFWLSNTYRLLNCLKQYSGEEQFLKQSTPRQKKNCLQNFDLSEHRQILSDLAIQIYHQL
ISIMQKTLTPAYWFPGMLEHESLQGISSMKPTGFRKRSSSFYNDSETYTISSILQELSVF
YSAMSHHGMEQSLTTQAVKQLFFLIGATTFNQIMLRKDMCSCRKGMQIRCNISYLEEWLK
ENELQSCGAIDTLRPLAQAAWLLQVNKSTDEDAKEIAEKCTELNPVQIVKILNSYTPIDD
FEKRVTSSFVRQVQSFLQEYEGATQLMLDTDYRFQVTFPFCPSSTALESLQVPSSLHLEF
LTRI
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggctttatctgagctgtacacaaagtataacagagtgtggataccagatgaaggacaa
gtgtggaaatcggctgaaatcactaaagacttccactcaggcgataatgttcttgaatta
ctcctggaagacggaactgttcacctccacccggttgacccctccaaacccaaactgccg
cctctcagaaacccagacatcttggtaggggagaacgacctcacggctctcagctacctg
cacgaacctgcggtcctgcacaacctcaaagtccgatttgtcgagtccagaatcatctac
acctactgtggtatcattctggtagccgtaaatccatataaacagcttcctgtctatgga
gacgcaatcattcatgcttattcaggccagaacatgggagacatggatcctcatatattt
gctgtggcagaggaggcgtacaaacagatggccaggaatcataaaaaccagtccatcatt
gtgagcggggaatccggagctggaaaaaccgtatcggcgcgttacgctatgaggtacttt
gctgttgtgagcaaatctggaagtcagactcgggttgaagacaaagtgttggcttccaat
ccgatcacagaggcaattggaaatgcaaaaaccacccgaaacgacaacagcagcaggttt
ggaaaatacacagagatcagctttgacaggaggtatcgcatcatcggagcgaacatgagg
acttacctcttagagaagtccagggtggtttttcaggcagaaaatgagcgtaattaccac
atattctaccagatgtgttcgtgtgcagactctgcagagttcaagcacctgagactgttg
agtgcagatgagttcaggtacaccggcatgggtggcgacataactatagatggtgtgtat
gacaaaaaagactttgaagagactcgacagaccttctcccttctgggtttgaaagaggac
ttccagtcagatgtttttaaagttttagctgcaattttgcatttggggaatgtggagatc
agaagctctggggacgacaagtcatcagctgctctgagcgatccacacctggcggcgttc
tgcgacttgctgtgtgtgagcgcggctgagctggtgcgatggctgtgtaatcgccggatc
gttctggtggctgaaacggtcgtgaagccggttcctaaagagcgagcggcggccggcaga
gacgctctggctaagcagatctacgcacacctgtttgactgcatcatcaccaggatcaac
acggcgctgcaagttcctggaaaacaacacgctttcatcggcgttctggacatctacgga
tttgaaacatttgacatcaacagctttgagcagttttgtatcaactatgcgaatgaaaag
ctccagcagcagtttaacttgcatgtgttcaaactggagcaggaggagtacatgaaggag
gacatcccttggactctgatagacttttatgataatcagcctgttattgacctgatcgaa
gcaaagatggggatcctcgacttgctcgatgaagaatgcttatttccccaaggaacagac
cagagctggctgcagaagctgttcaactaccttgaagccaatcatttgtttgagaagccc
aggttatcaaatgaggcatttgtgattcaacactttgcagacaaggtggaatatcagtgc
cgaggttttcttgagaagaatcgagatgctctttatgaagagctggtggacacgatggga
gccagtaagttttcctttctggcacatttcttccaagaggaggagcagagcagagcggcc
agtaaaggcgtcaaagttaaatcagccaggccttctgtgaaaccagccaataagcagctg
aggacttcagtgggagataaatttcgcagctccttgtctttactgatgggaacgctgaac
gccaccacccctcactatgttcgctgcataaagccaaacgatgaaaaactcccatttgaa
tatgactcggggcgggtggtgcagcagctgcgggcctgcggagtgcttgaaaccattcgg
atcagtgcacagagctacccgtccaggtggacgtacattgagttttacagccgatacagc
atcctgatgtcacatgtggaggcagatttcaacgacaagaaacaaacctgcaaaaatgtc
ctgcagagattgattcaggaccccaaccagtacaagtttggccgtacaaagatcttcttt
cgcgctggacaggtagcttatctggagaagctgcgtctggatcgactgagaggagcctgc
gtgacgattcagaaacacgtccgtggatggagccgcaggaggaaatacctgaggatacga
gaggcagccatcatcctccagcagtacatccgagggaagaggacgatccgtaaaatggtg
accgctgaaacactgaagcagggctgggctgctgtggtgatccagagacactggagaggt
tactgcatgagacagatctaccatgtcgtccaaatggcctccatcaccatccaagccttc
accagaggatggatggccagaaaacgctacaagaagatgattgaggagcacaaagctctg
gttctgcagaaatatgccaaagcatggctggcccggcggcgttttcaaaccatgcgccgc
cttgtgcttaatgtgcagctctcctaccgggtgcagcagctcaggaagaagactgaagag
cagaacaaagagaatcgaggattaatggagagactgacgagtctggccagcagtcattcc
caaacgatggaaaaactccacagtcaggaggcacaactggaaaaactaacaaacctgaag
gcatctctggaggaaagagaaaagaaagcaagagaagaggctagcatgacaattaatcag
cttcaaagacaatttgaagaactaaacactgaaaagcagaacttggagaaaaagcttgaa
gtttccatcaaagagacaaaagaaagttttgatcaagtaaaaagaaacctcctggaagag
aaagagaatgaagtccggcttagaaaaattgcagagaacaacactgagatccagagacat
gaccacgagaaagagctggagatcctgaaggaggagataaagagactgaaagaggacaga
gtgagtctgcagaggaaggttgaggatggggcgcaggtgaactctgacctgcaggaacag
gtcattcagctcaccaagcatgtgaaggtcatcccagagctgcgcagagatctgaacaac
ctgcagaatcagaagaacaacctggaccgtaagatgaaggaacagtcggagcaaacaaga
gctaaaacaaaggaaattgtaagacagctgcttggcggttttattgaagaggaaaagctt
ttggggcttgttccagaagactctgagaagatttatgaactggatgatttgcaggaagcc
tttgagagtctgcaaaaagccacaaggtctggaagttactgggaaaaccaccagaaggag
cagagggagacgtacgagtctcagatggagggcctgactctgagagtggaccaccttcag
aacgagaacagcaaactgcaaaatcttttccaggaaaaaagcaacatcaacgaggatatc
cgccaggaagtatcgaggctgagcagtgagaactcggtcataccggagctgaagctgcag
gtttcagagctgcacagacaaaagcaggagcttgagaccgttgttaaagagcagagcagc
gagttagcagaaaaaaatatggagatcagcaacattctccataagaagatcacagaagaa
agctcccaacgcagacattttgaggagaaagccagggagctggaggagatcagagaggag
ctccaagtaaagatagaggagttggaggaggagaatgaacatttgaagagacagcagctg
atggagggcgaagtgaagagaaaactgagagaggaaacgtcgcagttaacagctgagaac
atggacttagaggagcagcttgaccagaaagaacgctggattaagaaactccacagtcaa
ataaagtgccttgaaatgtcacagaaagcaaaacaaactcctgctcttcctaaagaatat
cttggcatgttggagtataagagggaggatgaagcaagactcattcaaaacatcataact
gacctgaagcccaaaggtgtggtggtcaatgtgattcctactctcccagccttcatcctc
ttcatgtgcgtccgccatgccgactacctgaacgacgacaacaaactgaagtctctgatg
aacgggatcatccaaggggtcaaaaaggtcgtcgtggctcaccacaaagactttgagtca
ttgtccttctggctctccaacacataccggctgctcaactgtctgaaacaatacagcggg
gaggaacagttcctgaagcagagtacccctcgccagaagaagaactgcctgcagaacttc
gatctgtccgaacacagacagatcctcagcgacctggccatacaaatctaccatcagctc
atctccatcatgcagaagacgctcacgcctgcctattggtttcctggtatgctggagcat
gagagcttgcaggggatttctagcatgaaaccgactggcttcaggaagcgatccagcagc
ttttataatgactcggagacgtacaccatctcctccatcctgcaggaactctccgtgttt
tattctgccatgagccaccacggcatggagcagagcctgaccacgcaggccgtcaaacag
ctcttctttctgattggagccaccaccttcaaccaaatcatgctccgcaaagacatgtgc
tcctgcaggaaaggaatgcagatcaggtgtaacatcagctacctggaggagtggctgaag
gagaacgagctgcagagctgcggcgccatcgatacgttgaggcctctggctcaggccgcc
tggctgctgcaggtcaacaaatccaccgacgaagacgctaaagagatcgcagaaaagtgc
accgaactcaaccctgtccagattgtcaagattttgaactcctacacacccatcgatgat
tttgagaaacgagtgacgtcatcgtttgttcgccaagttcagtccttccttcaggaatac
gaaggcgccacgcagctgatgctggacacagattatcgcttccaggtgacgtttcctttc
tgtccgtcttcgacagcgttagagtctctgcaggttcccagcagccttcatctggagttc
ctaaccaggatctga
DBGET
integrated database retrieval system
