Xiphophorus hellerii (green swordtail): 116711412
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Entry
116711412 CDS
T07363
Symbol
trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116711412 (trpa1)
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116711412 (trpa1)
BRITE hierarchy
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
116711412
NCBI-ProteinID:
XP_032406614
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Position
21:12778247..12798390
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AA seq
1117 aa
AA seq
DB search
MNFSRDVARQTSCYTYVIEDEDSALASLNAVELAEKGDLTLLENLVRKSPEVLSEKDECG
ASPLHHAAAGGHVSLIQFITSVIDPQELNSCDDQGNVPLHWAVERNKAESCRALMDLGAN
PNILNNALLSPLHLAVSLGHNSLLGVLLSYSVTDCNLQGDLDNTPLILACSLNNCEALSI
LLKHGAMLCTQNKLGHFAMHAAAFAGAKKAMEVILKAGEEHGHNAVSHINYLDKSRSSPL
HLAVRGGNFDAIRLCIATGAKIDQQQNDRCTPLHLACTQGAIEVVKLMLSTVDQVEDVIN
LTDGACQTPLHRATIFDHAELAEHLISLGSDLNNTDCKGNTPLLLATSCGAWKTVALLLS
KGANVNLKDKRGCNFLHLAILQPKGLKNLPEEVLQHNSVKALLNCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLACKSKDKKSALHFAAQYGRINTCHRLLESITDSRLLNEGDER
GLTPLHLASKAGHTKVVQLLLRKGALFHSDYKGWSCLHHAASEGYTQTMDILLSANPKLL
DKTDEDGNTALHIAARSGHVAAVRMMLVRGAEIVLNKNDTSFLHEALQNGRKEVANAVID
SERIEEALQQFAPGSTQRCPILDMIEFLPECYKHLLDRCMRESDDDHNSPEYHIEYDFRW
LQAPISQTLSEQGYAPKPLAAVNAMVQYNRIELLNHPVCKKYLGMKWVAYGSKAHVLNMF
LYLLGLLPLTNLIVTLRPSVNTTEAGELDIIMVPTSFTEQSMFLSFCMVMVLIANIYSIG
KEVVQITQQRWSYFRDGSNQIDWMSAICSLLFVIPLMVNAEGSWHWQAGAIAVLNSWIGF
LLYLQRFEGVGIYVVMFGEIMRTLLRIVMLFVYLMLAFSLAFHALMLNQKEFNSVPLSVI
QTFVMMVGELNYQNNFLDAYLNNELPFGFLTYAIFVNFVLLMPILLVNLMIGLAVGDIAE
VQRNASLKRIAMQIDLHTSLEDKLPYWFMKRVDKPSVTIYPNRKCSKHFLKQIISGEDER
SEVWTRLQSKTQSCTFVENELKRQKTRMKEMSGMLEKQHCLLKLIIQKMEISSEAEESDG
PVTAKGSMWPSLAHGKARGRSTSRWVPLIKAIEAKRK
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagagatgtggcacgccagaccagttgttacacgtacgtcatagaggat
gaagattcagccctggcaagtctaaatgcagttgagttggcagagaagggggacctgacg
cttctggagaacctggtgaggaagagcccagaggtcctcagtgagaaagatgaatgtgga
gctagtcccctccatcatgctgctgcagggggccacgtctccctcattcaatttattacc
tctgtcatagatccacaagaactaaacagctgtgatgaccagggcaatgtccctctgcac
tgggccgtggagaggaacaaagcagagagctgcagggcccttatggacctgggagccaac
cccaacatcctcaacaatgctctcctgtcccccctgcacctggcggtcagcctcggacac
aacagcctgctgggggtgcttttgtcctacagtgtgacagactgcaaccttcaaggagac
cttgataacaccccactaatactggcctgctctctcaacaactgtgaagctttgagcata
ctgctaaagcacggggccatgctctgcacccagaacaagctaggccattttgccatgcat
gctgctgccttcgcgggagcaaagaaagccatggaagtcattctgaaggctggagaagag
catggccacaatgcagtgtcccacatcaactacctagacaagtccaggagcagccctctc
catctggctgtgcgtggagggaatttcgatgccatccgtctctgcattgccactggggcc
aaaatagaccagcaacagaatgatcgctgcacgcctcttcatttggcctgcactcagggt
gctatagaggtagtgaaactgatgctgtccactgtggaccaagtggaagatgttatcaac
ctgactgatggggcttgccagacccctctgcatagggctacaatatttgaccatgcggag
ctggcggagcatctaatttctttgggttctgacctgaacaacactgactgtaaaggaaac
actcctttgttgttggcaaccagctgtggagcatggaaaactgtagctctgctgctgtcc
aaaggggccaatgtgaatttgaaagacaaacgtggctgtaactttcttcacctggccatc
ctgcagcctaagggtctgaaaaacctcccagaagaagtgctacagcataacagcgtgaaa
gctttgttgaactgtgaagataacgagggctgcacgccactgcactatgcctgcagactg
ggcatccatgactcagtgaagaacatgctgggcctctcagggcaagttggccttgcatgc
aagtccaaagacaagaagtctgcccttcactttgctgcacaatatgggcgcatcaacacc
tgccacaggttgctggagtccatcacagactctcgtctgctaaacgaaggtgatgagcga
ggcctgactccgctccatttggcttcgaaggctgggcacaccaaggtggttcagttgttg
ctgcgcaaaggagctctctttcacagtgattacaaaggctggagttgtctacaccatgct
gcctctgaaggatacacacaaactatggatatactgctctctgcaaatcccaagttattg
gataaaaccgatgaggatgggaacactgcactccatatcgctgcgagatctggacatgtg
gctgcagtcagaatgatgctggtcagaggggctgagattgtgttgaacaagaatgacact
tcctttcttcacgaagcgctgcagaacgggagaaaagaagtggccaatgctgtaattgac
agcgaaaggattgaggaggctttgcaacagtttgctcccggttccacccaacgatgcccc
attcttgacatgattgaatttctgcctgagtgctacaagcatctgcttgaccgctgcatg
agggagtctgatgatgatcacaacagccctgaataccatattgaatatgatttcagatgg
ctgcaggctcccatttcacagacgttgagtgagcagggctatgctcctaagccactagct
gcagtcaatgcaatggtgcaatataaccgcattgagctcctcaaccacccagtctgcaaa
aagtatctgggaatgaaatgggttgcctatgggagcaaagctcatgtgctcaacatgttt
ctgtacctgttagggctactgcccttaacaaacctaatagtgacccttcgaccctctgta
aacaccaccgaggcaggcgaactcgacatcatcatggttcccacttcattcacagagcaa
agtatgttcttgtcattctgcatggtgatggtcttgatcgccaacatctattctattgga
aaagaagtggtacaaataacacagcagcgctggagttacttcagggacggttcgaaccag
attgactggatgtcggccatctgctctcttttgttcgtcattcccctcatggtcaacgca
gaaggttcttggcactggcaagcaggcgcaatagcagttttaaactcctggattgggttt
ctcctttatctccagaggtttgagggtgttggcatttatgttgtgatgtttggggagatc
atgaggacattgctccgtattgtgatgctgtttgtgtatctaatgttggcgttcagttta
gcgttccacgctctgatgctcaaccagaaagagtttaacagtgtgccactctctgtgatt
caaacctttgtgatgatggtcggagagttgaactaccagaacaacttcctggatgcttat
ttgaacaatgagcttccatttggtttcttgacgtatgccattttcgtgaactttgttctg
ctcatgccaatcctcttggtgaacctgatgattggtttagcagtcggagacattgctgaa
gttcagagaaatgcttccctgaaacgaatagcgatgcagattgatctccacacatccctc
gaagacaagctcccttactggtttatgaagcgagtggacaaaccctcagtcaccatctac
cccaatcgcaaatgctccaagcacttcctaaaacaaattatttctggtgaggacgaaaga
agtgaggtctggactcgtctgcagtccaaaacacagagctgcacatttgtggagaatgag
ctcaaaaggcagaagaccaggatgaaagaaatgtcaggcatgttggagaagcagcactgc
ctcctgaagctcatcatccagaagatggaaatctcctctgaggccgaggagtccgatggc
cctgtgacagccaaaggcagcatgtggcccagcttggctcatggcaaagcaagaggccgc
agcacgtcacgctgggtgccgctgattaaggccatcgaggccaaacgcaaatag
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