Xiphophorus hellerii (green swordtail): 116711419
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Entry
116711419 CDS
T07363
Name
(RefSeq) zinc finger protein GLI3-like isoform X1
KO
K06230
zinc finger protein GLI3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116711419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116711419
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
116711419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-H2C2_2
zf-C2H2
FOXP-CC
zf-C2H2_4
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
116711419
NCBI-ProteinID:
XP_032406620
LinkDB
All DBs
Position
21:18427847..18550896
Genome browser
AA seq
1617 aa
AA seq
DB search
METQSQASSAAEKKKRVETIVATKGSSARTDISEKAVASSTTSNEDESSGTPYHRERRNA
ISSQAQTPGALDRTVNEEPSTSTEERPSLLKKELHSSLPHLSDHALPYRGTLFAMDPRNG
YLDSHYPAPPFFPTFHPPVPIDDRHTQGRYIYEPSPVNPLHVRTPSIATTPAFSDISLIR
ISPQRNPSMGAESPFHPPHPYISPYMDYIRSLHSSPSISVVPAARGLSPADAPHAGLTTA
DYYHQMALLAGHRSPYATDLLPSVASTGSASSATALHMEYLQAMENSRFPSPRLPARPNR
KRPLTISPLSEHSLDLQTMIRNSPNAIVTTLMNSSRSSSSTSGSYGHLSARAISPALSFP
YPPTPVALHVHHQLMGRQPGIVGSAFGHSPPLVHPTPTFVSQRPVPGIPPTGLGAGDRSA
ISNDSSQAKPTSESAVSSTGDPMHHKRSKMKPEDELPSPGAVSVQDHPDGMTLVKEEGDK
DESKQEPEVVYETNCHWENCCREFDTQEQLVQHINNDHIHGEKKEFVCRWEECSREQKPF
KAQYMLVVHMRRHTGEKPHKCTFEGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAF
SNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRKHVKTVHGPEAHVTKKQRGDYP
RPPPQPREPGGNSQGRSPGQLPLGGYTDQREYNHATSKQDECLQVKSIKTEKPMTSQPSP
GGQSTCSSDQSPISAYPSSGVQLAVSAGRSPGEGLEEDEQEEENEEEVEEECEGEPAPIM
DSTVSTATAAMLTLQARRSIGRPLRWMEHMKMERLKQVNGALPRLGSLSPTPPPKSSAMP
NILGKGSCLGRQWGVPAPQPPAHTELASTELTVLNLLQDRRDSSGSASSSAYLSSSRRSS
GISPCFSSRRSSQASQGDGMMPSQHHRRLHNLSSTDSYDPISTDASRRSSEASQYGGGVV
GGGVGALSGGSCGGGGVGFGGGGGSRGMLNLTPAQHYHLKAKYAAATGGPPPTPLPNMER
MSLKTRMAMMEEGGSNHSLPPLVRPPHCGEDAGRYNNGFMGHGGYRRRVLYPGEGTLNGN
RRASDPVRTQAPETCSLPPVQRFNSLNNLNPLPPLAHNSTAEYRSFSLQNYTRSEGNLQR
GLQHSTNTGSIAENAALEALAMEDDGVAGLFLGDEDILPDDLVQYLHSQDQMGGGSYIQN
EGQIHSSQRDNSYPTVEAGVNCTFPESHYLQPQQILERKSPSKLPIQWNEVSSGSVERSP
QRLQSHHMQCERWPEPTTASTGRLRNTLIPQQVSVDFHGSCPQANQSQSTSYVNTGVKLE
TLPNSCMEMRGTSMSNISQGTNGALPQGLKQQMSSGPSKQSHFQQNNSRTMWQIGNNLML
TRASMDSVPNLSQGTVPDHNRPVHAPYPPINNYKNVVKTQQYFNPQSNEIDQHPSQPQQL
QRSGDQCSLVCDVSGLKLENLDHGNMVQTVSDCLTYGSADCKSSSFPVLKEQSLLESMAA
SEGPGSCNRTTNALPSPGTDLVSSTVDGQVSGILDEGVNLDFGAILEDGYDQGSLVSEVL
SPSMFQGLSRTSSRLTTPQGSTTFNSVAPGLSNMAIGDMSSLLTTLAEESKFLAIMQ
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggaaacccagtcacaggccagttcagcagctgagaagaagaagagggtggagaccatt
gtggctacgaagggctcatcggcacgcactgacatcagcgagaaggcagtggcctccagt
accacctcaaacgaagatgagagttcggggacgccataccaccgtgagagacgcaatgcc
attagctcccaggcccagacgcccggcgccctcgacagaaccgtgaatgaggaaccctcc
acctccacagaggaacgcccgtctctgctcaagaaggagctgcacagctccctgccccat
ctgtctgaccatgctctgccatacaggggcacgctgtttgccatggacccccgtaacggc
tacctagactcacactaccccgctccaccgttcttccccaccttccatcctcctgtgcca
attgacgacagacacacccagggacgttacatctacgagccatcgcccgtaaaccctctt
catgtcaggactccatcgatagcgaccacgccggctttctccgacatctccctcattcgg
atctccccccagcggaatccgtccatgggggcggagtcgcccttccaccctcctcaccct
tacatcagcccgtacatggactacatccgctccctccacagcagcccctccatctccgtc
gtaccagccgcgcggggcctcagcccggcagatgcgcctcacgccggtctgaccacagct
gattactaccaccagatggctctgctggcgggccaccgcagcccgtacgccacagacctt
ctcccgtctgtggcgtccactggcagcgcgagcagcgccaccgccctgcacatggagtac
ctgcaggcgatggagaattcgcgcttcccaagcccaaggcttccggcacggcccaacagg
aagcgccccttgaccatctctccgctctctgagcacagcctcgatttgcagaccatgatt
cgtaactccccgaacgccatagttaccacactgatgaacagctcacgctccagctcctcc
accagcggctcctacggacatctctccgccagagcaatcagcccagctttgagcttcccc
taccctccaactccggtggcgttacatgtccaccatcagctgatgggccgccagcctggg
atcgtgggctccgccttcggccacagcccgccgttagtccaccctacgccgacctttgtc
agccagcgtcccgtgcctggcatccccccaactggtctcggcgctggcgatcgctcagcc
atctccaacgactcgtcacaggccaaaccgactagcgaatcagctgtgagcagcaccggc
gacccgatgcatcacaagcggtccaaaatgaaaccggaggatgagttgcccagtcccgga
gcggtgagtgtgcaggaccatcctgatgggatgactctggtgaaggaggaaggcgacaaa
gacgaaagcaaacaggagccggaggtggtttatgagacaaactgccactgggagaactgc
tgccgtgagtttgacacccaggaacagctggtacaacacatcaacaatgaccacatccac
ggagaaaagaaggaatttgtgtgccgatgggaggaatgctctcgagagcagaagcccttc
aaggcacagtacatgctggtggtccacatgcgcagacatactggggaaaaaccacacaag
tgcacatttgaaggctgcactaaggcctactcacgcctggaaaacctgaaaactcactta
cgttcccatactggtgagaaaccttatgtgtgcgaacacgaaggctgtaacaaggctttt
tccaacgcgtcggatcgggccaagcatcagaaccgaacacactccaatgagaaaccgtac
gtgtgcaaaatcccgggctgcactaagcgctacacagaccccagctccttacggaagcac
gtaaagacggtacacgggccagaggcgcatgtcaccaagaaacagcgtggcgattatcca
cgccctccacctcagcctcgggaacctggaggcaacagccagggcaggtcacctggacag
ctgcccctgggtggatacacggaccaaagggagtacaaccacgctacctcaaaacaagat
gaatgtctgcaggtgaaatctatcaagacagagaagccaatgacgtctcagccaagccct
ggcggtcagtctacatgcagcagtgaccagtcccccatcagcgcctatcccagcagtgga
gtccagcttgctgtgagcgccggacgctcgccaggggaggggctggaggaggacgagcag
gaagaggaaaatgaagaggaggtggaggaagagtgcgagggcgagccagcccccattatg
gactccacggtgtccacggccaccgcggccatgctgaccctgcaggcgaggcgaagcatc
ggccggcccctgcgctggatggagcacatgaagatggagaggctaaagcaggtgaacgga
gcgctgcccaggcttgggtccctgtctcccacaccaccccctaaaagttcggcaatgccc
aacatcctggggaagggatcgtgcttgggcaggcagtggggggtgcctgctcctcagcca
cctgctcacactgagttggccagcacggagctaacagtgctcaatttgctccaagaccgg
cgcgatagcagcgggagcgcctccagttcagcctacctgagcagcagccgacgctcttcg
ggaatctctccctgcttctccagtcggcgctccagccaggcttcccagggtgatggcatg
atgccgtcccagcaccaccgccgcctccacaatctcagctccactgactcttatgacccc
atctccacagacgcctcccgtcgatccagtgaggctagccagtatggaggtggagtagta
ggaggaggcgttggagcactctcaggtgggagttgtggaggcggaggagttggcttcgga
ggaggaggcgggtcacgagggatgctcaatttaacccctgcacagcattaccaccttaag
gcaaagtacgcagcagctacaggcggcccacccccaacgcctctacccaacatggaacgc
atgagtctgaagacccgcatggccatgatggaggagggtggcagcaatcacagtctaccg
cctttagtccgaccaccccattgtggtgaagacgctggaaggtacaacaatgggtttatg
gggcacggaggttatagaaggagggttctttatcctggcgagggaactctgaatgggaac
cgaagggcgagtgacccagtgcggacacaggctcctgaaacttgtagtctgcctccagtt
caacgattcaacagccttaataatctcaatcctcttcctcctctggctcataactctaca
gctgaatatcgaagttttagccttcagaactacacacgctcagagggcaacctgcagaga
ggcctacagcattcaacaaacactggcagcattgcagaaaatgcagccttggaagccctg
gcaatggaggatgatggtgtagccggcttatttcttggagatgaagatattttgccagat
gatttggtgcagtatctgcactcccaagatcagatgggtggtggttcatacattcaaaat
gaagggcaaatacattctagccaaagggacaactcctaccccactgtggaagcaggggta
aactgtaccttccctgaatctcactatctccagccgcagcagatactagagaggaagagt
cctagtaagcttcccattcagtggaatgaagtaagctcaggtagtgttgagaggtctcct
caaaggttgcaaagccaccatatgcagtgcgagaggtggcctgagccaacaactgcatca
actggtaggttacgaaacacgctaattccccagcaggtgtctgtggacttccacggcagc
tgcccacaggccaaccagtcgcaaagtactagttatgttaacactggggtgaagctggag
acactgcccaactcctgcatggagatgagaggtaccagcatgtcaaacatctcacagggt
accaatggggctcttcctcaaggtcttaaacagcagatgtctagtgggccttcgaaacag
agtcatttccaacagaacaacagcagaaccatgtggcagattggaaacaacctcatgctt
acccgggcctccatggacagtgtacccaacttgtcccagggaaccgttccagatcacaat
cgaccagtacatgctccatatccaccaataaacaattacaaaaatgtagtcaaaacccag
cagtacttcaatccacagtcgaatgaaattgaccaacaccccagccaaccccaacagcta
cagaggagtggagaccaatgttctcttgtgtgcgatgtatcagggctaaaactagagaac
ctagatcatggaaacatggtacaaaccgtttcagattgtctcacttacggatcagccgac
tgcaagtcctcttccttccctgtgttgaaagagcagagtttgttagagtccatggcagca
tctgagggaccaggcagctgcaacagaaccacaaatgcccttccctcccctggtacagac
ctagtcagcagcacagttgatggccaagtttcaggaatattagacgaaggggtaaatctg
gactttggtgccatcctggaggatggctacgatcagggtagcctggtctctgaggtactg
agcccctctatgttccagggcctgtcgaggacctcatcacgcctcaccacacctcaagga
tccaccaccttcaacagcgttgctcccggtctcagcaacatggccattggagacatgagt
tccctcctcaccaccctcgccgaggagagcaagttcttagctataatgcaatag
DBGET
integrated database retrieval system
