Xiphophorus hellerii (green swordtail): 116711439
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Entry
116711439 CDS
T07363
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116711439 (trpc1)
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116711439 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
116711439
NCBI-ProteinID:
XP_032406644
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Position
21:15750718..15767893
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AA seq
799 aa
AA seq
DB search
MHISAWPYSLSVVMAALYQGTDTSSPDKFLALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNVNSVDVLGRDAVTIAIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECMLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTCLKMGTVLSLALLWP
LLSVCYLLVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEECRNQLSFVMNSLYLATFTLKIVAHSKFKN
DPDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKF
LGLFLLVLFSFTIGLTQLYGKDHAKDTKDQIKQTKDCEGIFCQQQSNDAFHTFMGTCYAL
FWYIFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFRQIAN
HEDKEWKFARAKLWLSYFDDKCTLPPPLNILTSPKTVCYLVTSLRKWICSHTTKGKVKRQ
NSLKEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSMDQATVENLNDLRQDLSKFRNE
MRDLLGFRTSKYAMFYPRS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgcttggccgtactcgctctccgtcgtaatggcagctctgtaccagggc
acggacacctcctcccccgacaaattcctggccttgaaagacgtgagagaagtgaaagag
gagacgacgctggacgagaagctcttcctgctggcatgcgagaaaggtgactactacatg
gtgaagaagctgctggaggagaaccgccacggggagctcaacgtcaactctgtggatgtg
ctgggccgggatgcggtgaccatcgctatcgagaacgaaaacctggacattcttcagctt
ctgctcgagcacggctgccaggccacagatgccttgcttgtggccatagactcggaggtg
gtgggtgctgtggacatcctcctcaaccacagaccaagacgctcctccaagccctctatt
gctaaactgatgcagcggatccagaacccagagtactccaccaccatggatgtggctcct
gtaatcctggcagcacacagaaataattatgagatcctcaccatgctgctaaaacaggat
atctccctccctcggcctcacgctgtaggctgcgagtgcatgctgtgcaatgctaaaaac
aagaaggacagcttaaggcactccaggttccgactcgacatctatcgctgcctggcgagc
ccctctcttatcatgctgaccgaggaggaccccatactacgagcatttgagcttagcgca
gacctgaaggagctcagccttgtcgaggttgaattcaggaatgactacgaagaactggcg
aaacagtgcaaaatgtttgccaaggatcttctggctcaggctcgaaactctcgagagctg
gaagtgattctcaatcacacctccagcgaagatcatgttgacaagaggggcctgctggag
gagcgcatgaaccttagccggcttaagctagccatcaagtacaaccaaaaagagtttgtg
gctcagtccaactgtcagcagttcctcaacaccgtctggttcggagagatggccagctac
cgacggaagcacacctgtttgaagatgggcacggtcctgagcctggcgctgctctggccg
ctcctctctgtgtgctacctgctggtgccccgctcccgagtcggccagataatccacacg
ccgtttgtgaagttcatcatccacagcgcctcctatttcacctttctgctgctgctcaac
ctgtattctctggtctacaatgagggcaagaagaacacgatgggccccgcactcgagatg
attgattacctgctgatcctctggattataggaatggtgtggtcggacgtgaaacgtttg
tggtacgaagggctggaagactttctggaagagtgcaggaaccagctgagttttgtgatg
aattctctctacctggcaaccttcactcttaaaatagttgctcatagcaagttcaaaaat
gatccagacacagagaggaagaactgggacgccttccatcccatcctggttgctgagggc
ctcttcgccttcgccaatgttctgagttacctgagactcttcttcatgtacaccaccagc
tccattcttgggccactgcagatttccatgggtcagatgctgcaggagtttggaaagttt
ctgggcctcttcctgcttgtgttattctccttcaccattgggctgacccagctctatgga
aaagaccatgctaaagacacaaaggaccagattaagcaaaccaaggactgtgagggcatc
ttctgccagcaacagagcaacgatgcatttcacacgtttatggggacctgctatgctctg
ttctggtacattttctccttggcgcacgtcgcgctcttcgtcacccgcatcagctacaca
gaggagctgcgctcctttgttggtgccctgatcataggcacctacaacatcgtggtggtt
atcgtgctgaccaaactgctcgtggccatgctccataaaagtttcagacaaattgctaat
catgaggataaggagtggaagtttgcacgggccaaactgtggctcagctactttgacgac
aagtgtaccctgcccccacctctcaatatcctaacctcaccaaaaaccgtctgctacctg
gtgaccagcctaaggaagtggatctgttctcacactacaaagggcaaagtgaagagacag
aacagtctcaaggagtggaagaacctgaaacagaagcgtgatgagaactaccagaagatc
atgtgctgtctagtacaccgctacctgacctccacgaggcagaagatgcagagcatggat
caagccacggtggaaaatctgaacgacctgcgccaagacctgtccaaatttcgcaatgag
atgagggacctgctgggcttccggacatccaaatacgccatgttctacccaaggagctaa
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