Xiphophorus hellerii (green swordtail): 116711534
Help
Entry
116711534 CDS
T07363
Symbol
fan1
Name
(RefSeq) fanconi-associated nuclease 1 isoform X1
KO
K15363
fanconi-associated nuclease 1 [EC:3.1.21.-
3.1.4.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116711534 (fan1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116711534 (fan1)
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.1 phosphodiesterase I
116711534 (fan1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
Other FA pathway factors
116711534 (fan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAN1_TPR
Fan1_SAP
FAN1_HTH
TPR_12
SAP
zf-WRNIP1_ubi
PRP21_like_P
Motif
Other DBs
NCBI-GeneID:
116711534
NCBI-ProteinID:
XP_032406758
LinkDB
All DBs
Position
2:6915143..6926015
Genome browser
AA seq
871 aa
AA seq
DB search
MTERTSKDKPRRSLSLKKKKGDAKAGTSSTTKTPITNFFSSQPPPNLACPLCGQLVPRFK
INDHIDLQCQNFDRGDSTAASGGRNDYSGVQLSPGGNLSKSPETDQKEDTKTKTSPYFKK
NNSQQTPRDINSKTVVRTIDLGSLSSKLSRKYLKKNAEVSNTSDPMSSAESTSSSQKENV
QTLEDNNDCTSAETEAPSPVEKQSDQSMVSSKQPPSPAKQTKRKKKATFSVKGSFIRKKA
KYEGSSGEASSCLDPEDTNTEGQESDKPFSSEELSEKRDADVKVETADAQSLPYYLRNFR
TVLHAVLENEDDRMLFNQEDMSAVHGFQSLSVMAQKLYVRLFQRKLKWLQVNKLDYGEIC
SDLGSVAQELAQIGFLQTEKDLEDLMEALDLLPAPELKALAKTFHLGSSGTQKQQLVDGL
LRLSRQKSFFSPASSQSKVGTVILKRAKQLAGSCVRLSRGPRAVFSRILLLFSLTDTMDE
EEMAAGGQNQLFTILLVNSGRLAFPDYAVQREAKVFRDREDLIRYEASMRALIEVTVAMQ
GGQWDQALQLYTSAKKTWIELNSNHDLSHQEELPVFLRSFTTGWAYTRILSRGVEILQRL
RRYEEAVEELQALLKQTVYCPDSRGRWWDRLALNFHQHLKKTDQAICAMRDGLSDPLVRT
GHKLSLHQRALRMKDAPSCKKYRLQLRELPAVQIQDVKHVTIRGQLFPHEGGMGKSRFLL
PESEEGDGSAHSTVICSVEDLSLAHYRQLGFDQGIHGEGSTFSTLFALLMWDIIFMEGIP
DVFRNPYQTCPLDLYTDCFYENRREAIISRVQLLCEASVETLCAMLEDVWTSQEGKVCSL
VSWERFSSLQQAQMTALADVCVMFNIWYISP
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaagaacaagcaaagacaaaccgaggcgaagcttgtcattgaaaaagaagaaa
ggcgatgctaaagctgggacttcttctacaacgaaaaccccgatcaccaacttcttcagc
agccagcctccaccgaacctggcctgtcccctctgtggacaattagtcccaagattcaag
atcaatgatcatatcgatttgcagtgtcagaactttgatagaggagacagcactgcagct
tctggaggtaggaatgattattcaggggtccagctgtcacctggaggcaatctgtcaaag
tcccctgagacggaccagaaagaggacaccaaaactaaaaccagtccttattttaagaag
aataactcccagcaaactccacgggacataaacagtaaaactgtggtcagaaccattgac
ctaggaagtctgtcttcaaagttatccagaaaatatctcaagaaaaatgcagaagttagc
aacacatctgatccgatgagctccgcggagtcgaccagcagctcccaaaaggaaaatgtc
cagacattagaagacaacaatgactgtacttcagcagagacagaagctccatcacctgta
gaaaagcaatcagatcaatcaatggtttcatctaaacagccaccttcacctgccaagcaa
acgaagagaaagaagaaagccacgtttagcgtcaagggatcttttatcagaaagaaagcg
aaatatgaaggtagcagtggagaggcatcgtcttgtcttgatccagaggacacaaataca
gaaggacaggaatctgacaagcctttcagttcagaggagttgtctgagaagagggatgca
gatgtaaaggtagaaaccgctgatgcccaatcacttccctactacctgcgtaacttccgg
accgtgctgcacgcggtgttggagaacgaggacgacaggatgctcttcaaccaggaggac
atgtcggccgtacatggatttcagagcttgtcagttatggctcagaagctgtatgtgagg
ctctttcagaggaaactgaagtggctgcaggtaaataaactggattatggagagatctgc
agtgatctgggatctgttgcacaggaactggctcaaattggttttctacagacagaaaag
gacctcgaagatcttatggaggctctggatctgctgccggctcctgaactcaaagctctt
gctaaaactttccatctgggcagttctggcacccaaaaacagcagctggtcgacgggctt
ctccgtctgagcaggcagaagtctttcttctctccggcctccagtcagagcaaagttggg
acagttattctgaaacgggcgaagcagcttgcaggctcctgtgtgcgtctgtctcgcggg
cctcgggccgtcttctcccgcatcctgctgctcttctctttgacggacacgatggacgag
gaggaaatggcagctggaggtcagaatcagcttttcaccatcctgttggtgaactcgggt
cgtctggcgtttccggactacgccgtgcagcgagaggccaaagtgtttcgagatagagag
gatctcatcaggtatgaagcgtccatgcgagcccttatagaggtcaccgtggcgatgcag
gggggtcagtgggatcaggccctgcagctctacacctctgccaaaaaaacctggattgag
ctcaacagcaaccatgacctgagtcaccaggaagagctgccagtgtttctccgcagcttc
actacaggatgggcttacacacgaatcttatccagaggagtggagattttacaaaggctg
cgtcgctatgaggaagcagtagaagagctgcaggccctactaaagcagaccgtttactgt
cctgacagccggggccgatggtgggacaggctggctctgaactttcaccagcacctcaaa
aaaacggatcaagctatctgtgctatgagagacgggctgtcggatcctctggtgcgcaca
ggacacaaactttccctccatcagagagctctccggatgaaagacgctcccagctgcaaa
aaataccggctccaactcagagagcttcctgctgtccaaattcaagatgttaaacatgtg
accattcggggtcagctgtttcctcatgaaggcggcatggggaaatctagatttctttta
ccagaaagtgaagaaggagacgggagtgctcactctactgtaatatgctctgtagaagat
cttagtttggcacattaccgacaactaggctttgaccaaggaatccatggagaaggatca
acattctcaaccttgtttgctctcctgatgtgggacattatctttatggaaggtattcca
gacgtcttcagaaacccataccagacttgtcctctagatctttacaccgactgtttctat
gaaaacagacgggaagctataatctctcgcgttcagttgctctgtgaagcttctgtggaa
actctgtgtgccatgctggaagatgtctggacatctcaggaggggaaagtgtgttcgctg
gtcagctgggagcgtttctcgtccctccaacaggcacagatgacagctttggcagacgtc
tgtgtgatgttcaacatttggtatatttctccctga
DBGET
integrated database retrieval system
