Xiphophorus hellerii (green swordtail): 116711638
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Entry
116711638 CDS
T07363
Symbol
itgb1
Name
(RefSeq) integrin beta-1 isoform X1
KO
K05719
integrin beta 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03271
Virion - Rotavirus
xhe04145
Phagosome
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04514
Cell adhesion molecules
xhe04530
Tight junction
xhe04810
Regulation of actin cytoskeleton
xhe04820
Cytoskeleton in muscle cells
xhe05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
116711638 (itgb1)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116711638 (itgb1)
04514 Cell adhesion molecules
116711638 (itgb1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116711638 (itgb1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
116711638 (itgb1)
04530 Tight junction
116711638 (itgb1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116711638 (itgb1)
04810 Regulation of actin cytoskeleton
116711638 (itgb1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
116711638 (itgb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116711638 (itgb1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xhe04147
]
116711638 (itgb1)
04515 Cell adhesion molecules [BR:
xhe04515
]
116711638 (itgb1)
04090 CD molecules [BR:
xhe04090
]
116711638 (itgb1)
Membrane trafficking [BR:
xhe04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
116711638 (itgb1)
Exosome [BR:
xhe04147
]
Exosomal proteins
Proteins found in most exosomes
116711638 (itgb1)
Cell adhesion molecules [BR:
xhe04515
]
Integrins
Integrin beta subunits
116711638 (itgb1)
CD molecules [BR:
xhe04090
]
Proteins
116711638 (itgb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
116711638
NCBI-ProteinID:
XP_032406921
LinkDB
All DBs
Position
21:complement(4644217..4678301)
Genome browser
AA seq
802 aa
AA seq
DB search
MDLKLIFIAFIGLFYCCNSQKEGNECINKNAKHCGECIQTGAKCGWCTDPDFLKQGETVS
SRCDELQSLIKRGCNKTLIENPLGKRKILKNKSVTDRSKAGGNLRPENITQVQPQKVSLT
LRSGEPQSFELKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTSLMNEMLKITSDFKI
GFGSFVEKTVMPYISTTPAKLLNPCTGDQNCTSPFSYKNVLPLTDNGATFNRLVGEQQIS
GNLDSPEGGFDAIMQVAVCGEQIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKCH
LENSVYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYQELKNLIPKSAVGTLSA
NSSNVINLIIDAYNALSSEVILENTKVSNNVTIEYTSHCKNGVINKGENGRKCSNISIGD
EVHFNISITSKGCPNKTNPEIIKIKPLGFTEEVEIILHFICECDCHSEAINNSQVCSNGN
GTYECGACRCKDGRVGRECECSSNEVSTEDMDRTCRKDNGTDICSNNGECVCGTCECKPR
ENPEERYSGQFCECDNFNCDRSGNKLCGGHGRCECRKCICDPMWNGTACDCSLDESTCLA
SNKQICNGRGRCDCGICKCDDPKFQGPTCETCPTCPSVCAEHKECVECRAFGTGVKKETC
QKECSDFTMHKVPTKDKIPQPTDKSYPVMHCKERDANDCWFYYTYAVTNSTEKVVYVLDE
PDCPTGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQEN
PIYKSPINQFQNPNYGRKGAVL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaagctgatcttcattgcatttataggactcttttactgctgtaactctcag
aaagaggggaatgagtgcatcaacaaaaatgccaaacactgtggagagtgcatccagacc
ggagccaaatgtggctggtgtacagacccggacttcctgaaacagggcgagaccgtgtca
agccggtgtgacgagctgcagtctctgataaaacggggctgcaacaagacattgatcgag
aacccgctggggaaacggaagattctcaagaacaagtcggtgaccgatcggagcaaagcc
ggagggaacttgagaccagagaacatcactcaggtccagccccaaaaagtcagcctcacc
ctccgatctggtgagccgcagtcctttgagctgaagtttaagcgtgcagaagattacccc
atcgacctgtactacttgatggacctgtccttctccatgaaggacgatctggagaacgta
aagaacctggggaccagtctgatgaatgagatgttgaagattacttctgacttcaagata
ggatttggctcctttgtggagaagacagtcatgccttacatcagcaccactccggccaag
ctgctgaatccatgcacaggcgaccagaactgcaccagcccgttcagctacaagaacgtg
ctgccgctgactgacaatggcgccacgttcaacagactggtgggggagcagcagatctcg
gggaacctggactcccccgagggcggcttcgacgccatcatgcaagtggccgtgtgtggg
gaacagatcggctggaggaacgtaacccgcctactggtgttttccactgacgccggattc
cactttgccggcgacggcaagctgggtggcattgtgctgcccaacgacgggaaatgccac
ctagagaacagcgtctacaccatgagccactactatgactacccctcaatcgctcacctg
gttcagaagctgagtgacaacaacattcagactatttttgccgtcacagaagagttccag
cccgtttaccaggaactgaaaaatctgataccaaagtctgcagtaggcactctgtctgcc
aactccagcaacgtcatcaacctcatcatagatgcttacaatgctctttcttctgaagtg
attctggagaacaccaaagtttcaaacaacgtgacaatcgagtacacgtctcactgtaag
aacggagtaatcaataagggcgaaaatggaaggaagtgctccaatatctccattggagat
gaggtccattttaacatcagcatcacctctaaaggttgtccaaacaaaaccaatcctgag
attatcaagataaagcccctgggattcacagaggaggtggagattatcctccacttcatc
tgcgagtgcgactgccacagcgaagccatcaacaacagccaggtctgcagcaacgggaac
gggacgtacgagtgcggagcctgcaggtgcaaagatggtcgcgtgggccgggagtgcgag
tgcagcagcaacgaagtgtccacggaggacatggaccggacctgccgcaaggacaacggc
accgacatctgcagcaacaacggggaatgcgtgtgcggcacctgcgagtgcaagccgagg
gagaacccggaggagaggtacagcgggcagttctgcgagtgtgacaacttcaactgcgac
cgctctggaaacaagctctgtggaggacacgggcgctgcgagtgcaggaagtgcatctgt
gaccccatgtggaacggaactgcctgcgactgttccctggacgagagcacgtgtttggcc
agcaacaagcagatctgcaacggcaggggacgctgcgattgcggcatctgcaagtgcgac
gaccccaaattccagggcccgacgtgcgaaacgtgtcccacctgtccttcagtctgcgct
gaacacaaagagtgcgtggagtgccgggcgtttggcactggggtgaagaaagaaacgtgt
cagaaggaatgcagcgacttcaccatgcataaagtgccgaccaaagacaagatcccccag
cccaccgacaaatcctaccccgtcatgcactgcaaggagcgggacgccaacgactgctgg
ttctactacacgtacgccgtcaccaacagcacggagaaggtggtctacgtgttggatgag
ccggactgccccacgggcccggacatcatcccgatcgtcgcgggcgtggtcgccggcatc
gtcctgatcggcttggcgctgctgctcatctggaagctgctgatgatcatccacgacagg
agagagttcgccaagttcgagaaggagaagatgaatgccaagtgggatacgcaagaaaac
ccaatttacaagagtccaatcaatcagttccagaacccaaactatggacgtaaaggcgct
gtcctttga
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integrated database retrieval system
