Xiphophorus hellerii (green swordtail): 116711676
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Entry
116711676 CDS
T07363
Symbol
smarcd3
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116711676 (smarcd3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116711676 (smarcd3)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116711676 (smarcd3)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116711676 (smarcd3)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116711676 (smarcd3)
PBAF complex
116711676 (smarcd3)
GBAF(ncBAF) complex
116711676 (smarcd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
TFIIA
NPC1_MLD
Ribosomal_uS5m_N
Motif
Other DBs
NCBI-GeneID:
116711676
NCBI-ProteinID:
XP_032406993
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All DBs
Position
21:17980357..18029561
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AA seq
517 aa
AA seq
DB search
MATEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPYGGSPAVRPGL
PSPVMEPSRKRPAPSQQVQQQQQQQQQQQQQQAVQNRARKKPVGFPGASEMPARQMDMRE
PQSDPTLGSNAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEAL
KRPMKQQKRKLRLYISNTFNPARPDADDSDGSIASWELRVEGKLLDDPGKQKKKFSSFFK
SLVIELDKELYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLD
LRLARLLGIHTQTRSCIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIP
QRLTNLLLPPDPIVINHVISVDPNDQKKTACYDIDVEVEDPLKSQMSSFLLSTANQQEIA
SLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERR
AAFYHEPWSQEAVSRYFYCKIQQRRQELEQALAVRNT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggctacggaggagacggcggggggagccaggaaagccaccaagagcaaactgtttgag
ttcctggtccatggagtgcgtcctggcatgccgtctggagcgaggatgccccaccaagga
gcccccatggggccccctggccccccgtatggagggagtccggcagtgcggcccggcctg
ccctccccggtgatggagccgagtcgtaagcggcccgccccgtcccagcaggtccagcag
cagcagcagcagcagcagcaacaacagcagcagcaggccgtgcagaaccgcgccaggaag
aagccagttggatttcccggagccagcgagatgccagcgaggcagatggacatgagagag
ccccaatcagatcccacgcttggatcaaatgctaagagaaggaaaatggcagacaagatt
cttccgcaaaggatccgggaactggtacctgaatctcaggcctacatggatctactggct
tttgagcgcaagctggaccaaaccattatgcgtaaacgcgtcgacatccaggaagctctg
aagagaccaatgaagcagcaaaagcgtaaactaaggctctatatttcaaacacgttcaac
ccagctcgacctgacgctgatgactcagatggcagcattgcatcatgggagctgagggta
gagggaaagctgctggatgatccggggaagcagaagaagaagttttcttccttttttaag
agcttggtgatcgagctggacaaagagctgtacggtccggacaaccacctggtcgagtgg
caccgcacacccaccactcaggagacagacggtttccaggtgaagagacccggagatgtg
agcgtgcgctgcaccctgctgctgatgctggactaccagcctccccagtttaagctggac
ttgcgcctggcgcgcctgctgggcatccacactcagactcgctcttgcatcattcaggct
ctttggcagtacgtgaagaccaacaagctgcaggactcgcatgacaaagagtacatcaac
tgtgacaagtacttccaacagattttcgactgtcctcgcctgaagttttctgagattcct
cagcgcctcactaacctcctgctaccgcccgaccccatcgtcatcaatcatgtgatcagc
gttgaccccaacgaccagaagaagacggcctgctacgacattgacgtggaggtggaagac
cccctcaagagccagatgagcagcttcctcctctccaccgccaaccagcaggaaatcgcc
tccctcgacaacaagatccatgagaccatcgagtccatcaaccagctgaagatccaacgg
gacttcatgctcagcttctccagagatcccaaaggctacatccaagactggctcaagtcc
caaagccgagacctcaagttgatgaccgacgtggtggggaaccctgaggaggagcggagg
gcagcgttttaccacgaaccctggtcccaggaggcggtcagccgctacttctactgcaag
atccagcagaggagacaggagctggaacaggccttagcagtccgcaacacctaa
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