Xiphophorus hellerii (green swordtail): 116711717
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Entry
116711717 CDS
T07363
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04144
Endocytosis
xhe04520
Adherens junction
xhe04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116711717
09144 Cellular community - eukaryotes
04520 Adherens junction
116711717
04530 Tight junction
116711717
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116711717
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116711717
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
NPR1_like_C
Motif
Other DBs
NCBI-GeneID:
116711717
NCBI-ProteinID:
XP_032407075
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Position
21:complement(4985465..5382228)
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AA seq
1401 aa
AA seq
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MKVTVCFGRTRVVVPCGDGNVKVQSLIEQAAMRYKKAIAKDPSYWVQVHRLEHGDGGILD
LDDMLCDVVDDKDRLVAVYEEQDPHNGGDGTSASSTGTHSPEPFASEMNSASAFQPYQAA
SEIEVTTSALRSSMSLNVRRGSDPSLADLPPGEALVGQDEPSRKNPTRWSTTAGFQKYNN
KPNPRGASSTLEQQGRGAQAYRSLPRDASGWIAQFHRDMLRSSLSANHPMVDQWLDQQEQ
EEEEAEQRKNERRIERIEPVGRADSSLDRSPVLSLESMLKPVEVSNEGGPLGIHVVSFSS
HDVRTQGLLVKRLEPGGKAEHERLFQENDCIVRINQGDIRNLRFEQAQNIFRQAMGCPVI
LFHVVPASMKRQYEMLSAQNELSSPQSTRVRFSQDSQHPGDRSILDAGTSSRSRQQEAVH
LDHQGPLAGSTPEPSRRYATLPHAVPHLIISRTPSAPSPSLQRRISTTPSNSSYLKKKGR
SFNIQLKKGPEGLGFSITSRDVPIGGSAPIYIKNILPRGAAIQDGRLKAGDRLLEVSGVD
LNGKSQEEVVALLRATPMDGTVNLLVLRQEDLLLPREVKQDNDTVLTPDGTREFLTFEVP
LNDSGSAGLGVSVKGNRSKENHADLGIFVKSIIHGGAASKDGRLQVNDQLIAVNGESLLR
MTNQDAMEALRKSMSVEGNKRGMIQLIVARRLIKDSEDGSGMSELPVHAPLDDDEDQLSQ
SLYETIDCQDNMPASRASIHAHNGLYQLSPTVNMPQDDTVMIEDDRPPLLPANLSDQSSS
SSHDDMGFVGENPVAWIREMPNHNECSLSPDAEPDVSFQREGFARQSMSEKRTKQYDSPA
HLDIIKNRKSKSMDLGFEERHVSSSPRLKKSTSMESLQKDAHDVIAGDELNVQRIHPRII
RGRGCNESFRAAIDKSYVKPGLIPREENSVETLDEDTEESYRSGLESMSTSGDLSLGGGL
VDDKQKDGALGGPKETKSVDKEKDKDKNKPKKGVLKGLGEMFRFGKGKKDEDKVERKSSR
RSKAEDMQAYEDETIQMKQEQERIQAKTREIRERQVKEREYAEIQDVVSRTFSSDEEHTY
AGIGSLGSSQDSGSTDPYGHHYHLPQSPQSPRSPVNPQRNGPPLEALYAQVNKHRNGRPA
APDSSQMAPSNHDRIQRLRHEFQQARQGEEPEEHQSSYSFDQSWVSNGTETPSGRHSATA
ETQQQQQQQQQEDGDGFQQAPKQYNSLPRQPRKNPSMASQDSWERSYPPSEGFQTPKENA
RLSTGPGPRNGFPGKPSLNARVLLETQELLRQEQRRREQEASKTRAALAQEAANSSSGSG
AGVYHHSQASTPGHAPNHTPNHTHTSQRSKGPYRQDVPPSPTQLAKLGHRQGSEKGRFLY
SRGQEGTGRDPNKHLHSMNAK
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgtttcgggaggacgcgcgtggtcgttccgtgtggagatgggaac
gtaaaagtgcaaagccttatcgaacaagcagccatgaggtataaaaaggccattgcaaag
gaccccagctactgggttcaggtccacagactggagcatggcgatggaggcattttggac
cttgatgatatgctgtgtgacgtggtagatgacaaggataggctggttgcagtgtacgaa
gagcaagatccacacaatggaggggacggaaccagcgccagctccacgggaacgcacagc
ccagaaccgtttgccagcgagatgaattcggcgtcagcattccagccctaccaagctgca
agcgagatcgaggtcacaacatctgctctgcgatcaagcatgtcgctgaatgtccgtcga
ggcagcgatccctcgttggctgacctgcctccaggtgaggctctggttggtcaagacgaa
ccgtcaagaaagaacccgactcgctggtccacaactgctggtttccagaagtacaacaac
aagccaaaccctcggggcgcctcaagcaccctggaacaacagggcaggggtgcccaagcc
tatcggagtcttcctcgtgacgcgagtggctggattgctcagtttcacagagacatgctt
cgttcttcccttagtgccaaccaccctatggttgaccagtggcttgaccagcaggaacag
gaggaggaagaagcagagcaaagaaaaaacgaaaggaggattgagcgaatcgagcctgta
gggagggccgactcttcactggaccgttcacctgtgttaagtcttgaaagcatgctcaag
ccggtcgaagtgtccaatgaaggagggcccctggggatccacgtagtttctttcagttca
catgacgttaggactcagggcttgctggtgaaacgcttggagcctggaggaaaagctgag
cacgagcgtctcttccaggaaaacgactgcatcgtcaggattaatcagggagacattcgc
aacctgcgcttcgaacaagctcagaacattttcaggcaggcgatgggttgcccggtcatt
cttttccatgtggttcctgcctccatgaagagacaatatgaaatgctttcggcccagaac
gagctcagttcaccccagtcaacgagggtccgctttagccaagactcccagcatccaggg
gaccggtcgattctggatgcagggacgtcgtccagatctaggcaacaagaggccgtccac
ctcgatcaccaaggtcctctggcaggaagcaccccagaaccaagtcggcggtatgccacc
ttaccccatgccgtacctcacctcataatctccaggactccctcagcgccttccccctcc
ctgcagcgcagaataagcacaactccgtccaacagctcctacctaaagaaaaaaggacgc
agcttcaacatccagctgaagaaaggtccagagggtctcggtttcagtatcacctccaga
gacgtccctattggaggaagtgctcccatttacatcaaaaacattctccctcgaggcgct
gccatccaagatggacgactgaaagctggagaccggctgttggaggttagtggagtagac
ctgaatggaaagagccaggaggaagtggtagccctgcttcgagccacacccatggacggg
acggtgaacctgttggtgcttcgtcaggaggacctacttctgccacgagaagtgaaacag
gacaatgacacggtgctaaccccggacggaacacgagagtttctgacgtttgaggtccct
ctgaatgactcgggctccgctggcttgggggtcagcgttaaggggaaccgctccaaggag
aaccatgctgatctgggcatctttgtgaaatccataattcatggaggtgctgctagcaag
gacggacgtcttcaagtcaatgaccaactaattgcagtcaatggggagtcgctgctcagg
atgaccaatcaggatgccatggaggcgcttcggaagtccatgtcagtagagggcaacaaa
cgtgggatgattcagctcatcgtggcccggcggttgattaaggacagcgaggacggttca
ggaatgtcggagcttcctgtacatgcgcctttggacgacgatgaagatcaactctctcag
tcactctacgaaacgattgactgccaggacaacatgcctgcatcacgcgctagcatacat
gcacacaacggcctctaccagctctctccaactgtgaacatgccacaagacgacacggtg
atgattgaggacgataggccgcccctgcttccagccaacctgtctgaccagtcgtcctcc
agttcccacgacgacatgggctttgtgggagaaaacccggttgcctggatacgtgagatg
cccaatcataatgaatgctctctgagtccggacgcagaacccgatgtttccttccagagg
gagggcttcgcccgccagagtatgtcagagaagcgcaccaagcagtacgacagcccggct
catctggacatcatcaagaaccgcaagtccaaaagcatggatcttggttttgaagagcga
catgtcagctcttccccgcgtctaaaaaagtccacctccatggagagtctccagaaagat
gcccacgacgtcatcgcgggcgacgagctcaacgtccagaggattcatccacgcatcatc
agggggagaggctgcaacgagagcttccgggcggcaatcgacaagtcatatgtgaaacct
ggtctcataccaagggaagaaaacagcgtggagacattggatgaagacacagaggagagc
taccggtcaggcctcgagtcgatgtccacgagcggcgacctcagcctaggcggcgggctg
gttgatgacaaacagaaggacggtgccctgggcgggccgaaggaaaccaagagcgtggac
aaggagaaagacaaggacaaaaacaaaccaaagaagggtgtgctgaagggcctgggtgag
atgttcaggtttggaaagggcaagaaggacgaggacaaggtggagagaaagagctcaaga
agatcgaaagctgaagatatgcaagcatatgaagatgaaaccatccaaatgaagcaggaa
caggaaagaatccaggccaaaacgcgggaaattcgggagcggcaggtgaaggagcgggaa
tatgctgagatccaagacgtcgtcagccgcaccttcagctcagacgaggagcacacctac
gccggcatcgggtcgctgggctcgtctcaagacagcggcagcaccgacccctacggccac
cactaccacctccctcagagcccgcagagccctcgatcccccgtcaacccacagcgcaac
ggaccgcctctggaggcgctgtacgcccaggtcaacaagcaccgcaacggccgaccagcg
gcacccgacagcagtcagatggctcccagcaaccatgaccggatacagaggctgaggcac
gagttccagcaggccaggcagggggaggagccagaggaacatcagagctcctacagcttc
gaccagtcctgggtgagcaacgggaccgagacgccgagcggacgccactctgccacagcc
gagactcagcagcagcagcagcagcagcagcaagaagacggagacggtttccaacaggcg
ccgaagcagtacaactctctgccacggcaacctcgaaagaaccccagcatggcgtcccag
gattcctgggagcggtcctacccaccgtccgagggattccagacgcccaaagagaacgcc
cggctctccacgggtccgggccctcgcaacggcttcccggggaaacccagcctgaacgcc
cgggtcctgctggagacccaggagctgctgaggcaggagcaaaggcggagagaacaggag
gccagcaaaacccgagcagctctcgcgcaggaggccgctaacagcagcagcggctccggc
gccggcgtctaccaccacagccaggcctcaaccccaggccacgccccaaaccacacccca
aaccacacccacacctcacagcggtccaaaggcccctacaggcaggatgttcctccatca
cccacacagctggccaaactgggccaccgtcagggctcagagaagggacggtttttatat
tcccgagggcaggagggaacgggaagagatccgaacaagcatttacacagcatgaacgca
aagtag
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integrated database retrieval system
