Xiphophorus hellerii (green swordtail): 116711857
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Entry
116711857 CDS
T07363
Symbol
lama1
Name
(RefSeq) laminin subunit alpha-1 isoform X1
KO
K05637
laminin, alpha 1/2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04510
Focal adhesion
xhe04512
ECM-receptor interaction
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116711857 (lama1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116711857 (lama1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116711857 (lama1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_N
Laminin_B
Laminin_II
Laminin_G_3
Laminin_I
HMMR_C
Transcrip_act
Motif
Other DBs
NCBI-GeneID:
116711857
NCBI-ProteinID:
XP_032407315
LinkDB
All DBs
Position
21:26005204..26036196
Genome browser
AA seq
3061 aa
AA seq
DB search
MKVLLLLMVVLMERAAAQHRGLFPAIFNLASNAEISSNATCGDPEPEVYCKLVEHVPGRR
IKNPHCPRCDANSVLTKERHPITNAIDGTNQWWQSPSIKNGRQFHWVTITLDLNQIFQVA
YIIIKAANSPRPGNWILERSLDGVTYDPWQYYAISDSECLHRYNITPRFGPPTYKTDTEV
ICTSYYSRLNPLEHGEIHTSLINGRPGADDLTPDLLNFTSARYIRVRLQRIRTLNADLMT
LSVHDPRDVDPIVTRRYFYSIKDISVGGMCICYGHAQSCPLDPVTKKLKCVCEHNTCGEN
CNECCPGYHQLPWQPGTLSEGNTCEKCNCHNKASDCFYNQTVSDLGLSLNRHGVHQGGGV
CIDCQQNTTGTNCENCRDGYYRPAEASPYSDFPCVECSCDLRGSRSSVCRRDDTEPGVSA
GQCQCKDGFSGRRCDCCAFGFRDFPACARCECNLAGSTNSDPCSSCTCKVNVMGVRCDQC
KPGFYNLQQQNPLGCTDCFCFGVSDVCQSSDWSVTQVVLSDAVLRPSDPIQAALDVHGND
LGVPSNASSTVAHKHRLVWAAPHRFLGNKLVSFGGRLVSSVVYDVAPDNRDQTLPVLTDV
IMQGNGQTLRLSPPLLLFLSPLAEQPVAMEIYPDRFVDDRTGGPVTRHDLLLVLTDLTRL
SVRVHLNTSTEGPIRLGSVSLYVASSGSGSGVRAVAVETCECPAGYSGTSCESCLPGFYR
VGAVLFGGNCMQCECGGRSAHCDITGVCQGCSHNTTGPHCELCLPGFYGDPTNGDCRLCP
CPLTEPSNSFSPTCVVESSGQVSCDRCQPGYAGSNCERCASGFYGNPQVVGGACVSCECN
GNVNVSEAGYCDAVTGECLRCLDNTAGKHCEACRPGYYGDAVIAKDCKDCGCDVNGSSSS
VCDITTGQCVCRENVTGRTCDRCQSGFFGLQSGRGCLPCGCSQSGSVSESCDQDGRCRCT
EGVAGDKCDRCSRGYYGYHGRNCTACICDHTGGNCDPDSGECTCPPNTEGDTCHRCETGY
WGHDLSTGCKPCSCSAAGSSAPRCHLLSGECPCRDGFSGRSCDRCAPGYYGYPACSACDC
DLAGTNETFCNKTLGVCECRWSGECVCKAGVSGRRCEECVSGWFALSDQNPNGCSDCFCS
GFSKDCEEQGGLTRVPVGLGPVLSLVSLSSQQSVVSGVYQQGGDMLLDTRQLNSSGFAGP
LYWRLPPQTEGNQLMSYGGLLSYIITFYAEDGSGLSNQEPQVLMRGGTLRKHTIFTDVVA
PSNGIVTQHNIRLTEHMWKYFNSVSQRAVTRADFMSVLSNVQDVLIKASYGTELQQSRIS
NVTMETAVRAESDSSQEKARLIESCLCPPGYSGLSCQVCSAGFFRQPQSELPAQSLKTMT
VRPCLPCRCNNHSATCDPETGDCQDCQHHTSGRRCDVCSPGYYGNVSGSISDCSPCACPL
VENSFSSSCVSAAGGFRCTSCLTGYEGRRCERCSPGYHGNPTTPGGLCLLCGCSGWGSLH
QVCDDLTGRCQCKPGVRGRSCDQCEERHALQQEQCVSCDDGCSTVLLDDLDRLNDHFLSV
NLSAVAMAPYRQLVLLENRTKDFKVSVSPNRTGASHLSRLDEDLHHLTFDLSALQQQVTR
LSGSLRDFLTSTNNSWSLSELLLQRVSSLQDEIQVLQKEAGLLNQTNDDELTEDAAGRLE
EAESRLQRLRGINLTAARSAANQELSLSQALLRSLQMDFLSRSPAGEDRLRPLSDSLGVA
MTTLQHARVPLGEAAERNSETEKLLDAAGALQRHLQAARQNLSSALVSVHKLMEDGQTLQ
EDAVSLRAQLTNRSAQVELLASQLDQLRPALRKHVEVLLIGLKTNSALESVHRAEGHAHQ
LQSHAHSLHSSMMSVVNGSQSLAPSALLDDDVIQRVGSSHQEAGSGLIAASLALHLTGQS
ERTLAAEGGVRLKVSSRVLEESRQVNAMAEETQASVSMATTKLQLARDGVENCSRLLHQP
IRELQQLPPGSSRLAQLQAEQARSGLQGALLRLQGLRLQLQNSSSVVGKTHITVRETNGL
MGRAQATANEVQRRLEEAEHRTQQLLERLKPLSMLGETLSRNLSDIRELIDQARRQAASI
KVAVQADRNCVRSYKPPVQSSNVNTMSLVLKTSRPTNLLFYLGSNTTVDFLAVEMHHGKV
SLLWNLGSGTTRLQFPETDIANNRWTKINATRFGAHAALSVRQLDSGSAPLPAVTSSSPG
SSRVLDIDRNTVIHIGGMGALTQRPAGLHSSSFQGCLGEASLNERNIGLWSYVSREGRCG
GCFSSPQAEETSFYFDGSGFSVVQKSLKATSTSVVLLFKTLSPGGLLLYLASNNTRDFLS
LELVEGHVRLAFDLGSGALVQTSNRKYNTGVWFKVTLQRNKRKGYLSVMAAGQSSEKEVL
EAESPGTASDLNRYDLDPIYIGGFPSSRAIRRQVVSRAYVGCIKNVEIARSNFDLLRDAF
GVRKGCVLKAVRSVSLLSGGFVQIAPPSFAQEAELLFTFSSNNQSGVLLAAFSDDRADRQ
YFLSLHLVSGGVEAELGDVGGATRKVKVLKSGGGSFGDGSEHSVIMTVNRKSLSLQVDDE
HLKSASLMLGGFSRLTPSSLFIGGLPPEKESRLPIRLRVSSQSFRGCIHHLVVGGALVDL
SVAVSYKGAELNSCLLERSTAGAVLPDDPDVESTPALLSLTPPTHLRALTAAALTCAAEQ
EASFLPSAAQFGSSSHSHMTFLINPGAFRKSVSVRLSVRSRALDGLMLLLSDAKQMDFVV
LGLRGGRVRLSADLGKGPASVLSTAVNDGHWHSVSAEVSRRSVSLTVDGSRPATASIKGN
HMDVDRTLFLGGLPAGVNGRRIGVSSSLQGCLRSVSLNGTILDLSKPFSQHDVTSCFTKD
QTGSYFNGSGHAELMHDGYKVGADMAVSLEFRTSQSEGVVLGISSAKVDAVGLEMVDGQV
VFNVNNGAGRVALRSTGPVLCDGLWHHLVARKTKHGLTLRVDGTQYSAANPYPQSTSAET
NNPVYLGGVPAGVKQNCLSVRSGFRGCLRNLRLARSHLNLPLHLSSAHFLSGVTPDSCPA
S
NT seq
9186 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttctgctgctgctgatggtggttctgatggagcgggctgcagctcagcacaga
ggcctgttcccggccatcttcaacctggccagtaacgcagagatcagcagcaacgccaca
tgtggggacccagaaccagaggtttactgcaagctggtggaacacgttccgggtcgtaga
atcaagaacccacactgccccagatgtgacgccaactctgtcctcactaaagagcgtcat
ccaatcacgaacgctattgatggaaccaatcagtggtggcagagtccgagcatcaagaac
ggccgtcagtttcactgggtcaccatcaccctggacctgaaccagatatttcaggttgct
tacatcatcatcaaagcagccaattctccacgaccaggtaactggatccttgaacgctct
ctggatggtgtgacctatgacccctggcagtactacgccatcagtgactcggagtgtttg
catcgctacaacatcacaccgagatttggaccgccgacctacaagaccgacaccgaggtc
atctgtacatcctactactccagactgaacccactggagcacggagagatccacacctct
ctgatcaacggtcgtcctggagcagatgatttgacccctgacctcttgaactttacatcg
gctcgttacatcagagtgaggcttcagagaatcagaacgctgaatgctgatctgatgacg
ctgagcgtccacgacccgcgggacgtcgaccccatcgtgacccggaggtatttttactcc
atcaaggacatctctgtaggcgggatgtgcatctgctacggacatgcccagagctgcccg
ctggacccggttaccaagaaactgaagtgtgtgtgtgagcacaacacctgtggggaaaac
tgtaacgagtgttgccctggttaccatcagctgccatggcaaccaggaaccctctctgaa
ggaaacacctgtgaaaagtgtaactgtcacaacaaagccagcgactgtttctacaaccag
accgtctctgacctcggcctcagcctaaaccgtcatggcgtccaccaggggggcggagtc
tgtatcgactgccagcaaaacacaactgggaccaactgtgagaactgcagggacggatac
tacagaccggccgaggcgtctccgtactctgactttccctgtgtggagtgcagctgcgac
ctgagaggatccagatcatcggtttgccgcagagacgacacagaaccaggtgtgtccgcg
ggtcagtgccagtgtaaggacgggttctcgggtcggcgctgtgactgctgtgcgttcggg
ttcagggattttcccgcctgcgctcgctgtgagtgcaacctggcaggaagcaccaacagc
gacccgtgcagctcctgcacctgcaaggtgaacgtgatgggggttcgctgtgatcagtgc
aaaccgggcttttacaacctgcagcagcagaaccctctgggctgcaccgactgtttctgc
tttggtgtttctgatgtctgtcagagttctgattggtccgtcacgcaggtggttctttca
gacgctgtcctccgaccttctgaccccatccaagctgctctggatgtccatggaaacgac
cttggcgtccccagcaatgcgtcctccaccgtcgcacacaaacacaggctggtatgggcg
gcgccccaccgtttccttggcaacaagctggtgtccttcgggggacggctcgtctcctct
gtggtttacgacgtcgccccggacaaccgggaccagaccctacctgtcctcactgatgtc
atcatgcagggtaacggccagactcttcgtctctcgcctcctctgctcctcttcctctcg
ccgctggcagagcaacccgttgccatggagatttacccggaccggttcgtagacgaccga
accggaggcccggtaacacgacacgacctgctgctggttctgacagacctgacccgcctg
tcggtccgggtccatctgaacacttccactgaaggaccgatacggctcggttcggtctct
ttgtatgtcgccagttctggctcaggttctggagttcgggcggtcgccgtggagacgtgt
gaatgtccagccggttacagtggaacctcctgtgagtcgtgcctccctgggttctaccgg
gtcggggcggttctgttcggagggaattgcatgcagtgtgagtgcggcggccgctccgcc
cactgtgacatcactggagtctgtcagggctgcagccacaacaccaccggcccccactgt
gaactctgccttcctggtttctatggcgacccgaccaacggcgactgccggctctgtccg
tgtcctctaacggagccgtccaacagtttcagtcctacctgtgtggtggagtcgtcgggt
caggtgtcatgtgaccggtgccagcccggctacgcggggtcaaactgtgagaggtgtgcc
agtggtttctacggtaacccgcaggtggtgggcggggcctgtgttagctgtgaatgtaac
ggtaacgttaacgtgagcgaggctggttactgcgacgctgtgaccggggagtgtctgcgt
tgccttgacaacacagcagggaaacactgcgaggcatgccgtcctggttactatggcgac
gcagtcatcgccaaggactgcaaagactgcggctgtgatgtcaacggctcttcctccagt
gtttgtgacatcacaacaggtcagtgtgtgtgccgagagaatgtgacgggacgcacctgt
gaccgctgccagtcggggttcttcggactgcagagtgggcgtggctgtctgccctgcggc
tgcagccaatcaggatctgtctctgagtcatgtgaccaggatgggcggtgccgctgcacc
gagggcgtagctggagacaagtgtgatcgttgtagtcgtggttactacggttaccatggc
agaaactgcacagcatgcatctgtgatcacaccgggggaaactgtgaccccgacagcgga
gagtgcacctgcccccctaacacagagggagacacctgccacaggtgtgagacaggctac
tggggtcacgacctcagcacagggtgcaagccgtgcagctgcagcgcagcaggaagctcc
gccccccggtgccacctgctcagtggagagtgtccctgcagggacggtttctctggcaga
tcatgtgaccgctgtgcacctggttactatggttacccagcatgctcagcgtgcgactgc
gacttggcaggaaccaatgagacgttctgcaataaaacgctcggcgtgtgtgagtgcaga
tggtctggagagtgtgtgtgcaaggccggcgtgtcgggtcggcgctgtgaggagtgtgtt
tctggctggttcgctctgtccgaccagaaccccaacggatgttctgactgtttctgttct
ggattcagcaaagactgtgaggagcagggagggctgacccgagtccctgtcggtctgggt
cctgttctgtcattggtcagcctgtccagtcagcagagtgtagtatctggagtctaccag
cagggcggcgacatgctgctcgacacgcgccagttaaacagtagtgggttcgctggcccc
ctctactggaggcttcccccccagactgaaggcaaccagctgatgtcgtacggcggcctg
ctctcttacatcatcactttctacgctgaggacggctcaggactgtccaatcaggagcct
caggtgctcatgaggggcgggaccctgaggaaacacaccatattcactgatgtggttgcc
cctagcaacggcatcgtcactcagcacaacatcaggctgacggagcatatgtggaaatat
ttcaactcggtgtctcagagggcagtgacccgggcggactttatgtccgtcctcagtaat
gtccaggacgtcctcataaaggcctcgtatggaactgagctccagcagagcaggatttct
aacgtcaccatggagacggctgtgagggcggagtcagactcctcccaggaaaaggccaga
ctgatcgagtcgtgtctctgtccaccaggatacagcggcctgtcctgtcaggtctgttcg
gcaggtttcttccgccagcctcagtcagaacttcctgctcagagtctgaagaccatgacg
gtgcgtccatgtcttccatgtcgctgcaacaaccacagtgcgacttgtgacccggagaca
ggagactgtcaggactgccagcatcacaccagtgggcggcgatgtgacgtctgctccccg
ggttactatggaaacgtcagcggctccatcagtgactgctctccgtgtgcctgccccctg
gtggagaacagtttcagttcctcctgcgtttcagccgccggaggtttccgctgcacttcc
tgtctgacaggatatgaaggcagacgctgtgagaggtgctctcctggttaccatggtaac
cccaccacgccaggcgggctctgtctgctgtgcggctgcagtgggtggggctccctccat
caggtgtgtgatgacctcacaggacgctgccagtgcaagcctggggtcagaggtcggtca
tgtgaccagtgtgaggagcgccacgccctgcagcaagagcagtgtgtgtcgtgtgacgat
ggctgcagcaccgttctccttgacgacctggaccgccttaacgaccacttcctgtctgtc
aacctgagcgctgtcgccatggcgccgtaccgccagctggtgctgctggagaaccggacc
aaagacttcaaggtgagcgtttctccaaacagaactggagcgtctcacctgtccagactg
gatgaggacttgcatcacctgacctttgacctcagcgctttgcagcagcaggtgacacgt
ctgtctgggagcctcagggattttctcacctccaccaacaacagctggtccctcagtgag
ctgctgctgcagagagtcagcagcctgcaagacgagattcaggtgctgcagaaggaggcg
gggcttctgaaccagaccaatgacgatgagctgactgaggacgccgccggccgtctggag
gaggcggagtctagactacagcgtctcagagggatcaacctgacagccgccaggtcggca
gccaatcaggagctcagcctctcccaggctctgctccgctcgctgcagatggactttctg
tccaggtcgcctgcaggtgaagacaggctccgccccctcagcgactccctgggcgttgcc
atgacaacgctgcagcatgcgcgagttcctcttggcgaggcggcagagcgaaactcagag
acagagaagctccttgatgctgcaggcgctctgcagcgccaccttcaggcggcccggcag
aacctgagttctgcgctggtgtcggttcacaagctgatggaggacggtcagacgttgcag
gaggacgccgtcagtctgagagcccaactgaccaaccgcagcgcgcaggtggagctgctg
gccagccagctggaccagctgcgtccggcgctcaggaaacacgtggaagttttgctgatc
ggcctgaaaaccaacagcgctctggaaagcgttcaccgagccgaaggccacgcccaccag
ctgcagagccacgcccactcgctgcatagttccatgatgtcagtggtcaacgggtcccaa
agcctcgctccctcggcgctcctggatgatgacgtcatccagcgggttggctcctcccac
caggaagctggatcaggcctgatcgctgcctcgctcgccctccacctgaccggccaatcg
gagcggacgctggcagcggagggcggagtcaggctgaaggtttcctccagggtcctagag
gagagtcggcaggtcaacgccatggctgaagagacgcaggccagtgtttccatggcaacc
accaaactgcaactggccagagacggcgtggagaactgcagccgtctgctccatcagcca
atcagagagctgcagcagcttcctccaggttcctccaggctggctcagctccaggctgaa
caagctcgctccgggctgcagggggcgctgctgaggctgcagggactccggctgcagctg
cagaactcttcttctgtggtgggaaagacccacatcacagtgagggagaccaacggcttg
atgggtcgggcccaggctacagccaatgaggtgcagcgcaggctggaggaggcggagcat
cgcacacagcagctgttggagagactgaagccgctgagcatgctgggagaaaccctgagc
aggaatctgtcggacatcagagaactgatcgatcaggccagaagacaggcggcgtcgata
aaggtggcggtccaggcagacagaaactgcgtccgatcctacaaaccgccggttcagtcc
agcaacgtcaacactatgagtctggttctgaagacttcccgtccaaccaacctgctgttc
tacctgggcagcaacaccacagtggacttcctggcagtagaaatgcatcatgggaaggtt
tccttgctgtggaacctgggttctggaacaacccgactgcagtttcctgaaacagacatc
gccaacaaccgatggaccaaaatcaacgctacgcggttcggggcgcacgccgctctgtcc
gtccgacagctggactctgggtcggctcctctgccagcagtgacatcctcttctccagga
tcatcgcgagttttggacattgacagaaacacggtgattcacatcggaggaatgggagct
ctcactcagcgtcctgcagggctgcactcgtcctccttccagggatgcctgggggaagct
tcgctgaacgagcggaacatcggcctgtggagctacgtcagtcgggagggccggtgtgga
ggctgcttcagcagtccccaagcagaggagacatctttctactttgatggctcggggttc
tctgtggtccagaagtctctgaaagccacatccacctccgttgtcctgctgtttaagact
ctgtctccaggaggactgctgctctacctggcctccaacaacacgagggacttcctgtct
ctagaactggttgagggtcatgtccgtctggcgtttgacctgggctcgggggctctggtc
cagacctccaacaggaagtacaacactggagtttggttcaaggtcaccctgcagaggaac
aagcgcaaaggttacctgtccgtcatggcggcaggccaatcatcggagaaggaggttttg
gaggccgagtctccaggaaccgcttcagacctgaaccgctatgacctggaccccatctac
atcggagggtttccttcatccagagcgatcaggcgacaggtggtgtcccgggcatacgtt
ggctgtataaagaatgtggagattgctcgttcgaactttgacctgctgagggacgcattc
ggggtccggaagggttgcgttctgaaggcggtgcggagcgtctctctgttgtctggaggt
ttcgtccagatcgctcctccatcattcgctcaggaggcggagcttctctttaccttctcc
tccaacaaccaatcaggagtgttgctggcggccttcagtgacgaccgagcggacagacag
tacttcctgtcccttcacctggtctcaggtggtgtggaggcggagcttggggatgtgggc
ggagccactcggaaggttaaagtattgaagtctggtggaggatcattcggtgatggaagc
gaacactcagttattatgactgtcaacaggaagtctctgtccctccaggtggacgatgag
cacctgaaatcggcatctctgatgcttggaggcttttctcggctgaccccatcctctctc
ttcattggtgggctcccgccagagaaggagtcccgtctgccaatcagattgcgagtttca
tcccagagcttcagaggctgcatccatcacctggtggtgggcggagcgcttgtggaccta
tcggttgcagtcagttacaagggggcggagcttaacagctgcctgttggagcggagcacg
gcgggggctgtgctacctgatgacccggacgttgagtcgacacctgcactcctgtcttta
actccgcccacacacctgagagccctgacagctgcagcgctaacatgtgcggcggagcag
gaagcatccttcctgccgtcggcggcgcagtttggttcgtccagccacagtcacatgacc
ttcctcatcaaccccggcgccttcaggaagagtgtgtcggtgaggttgtcggttcgaagc
agggctctggacggcctcatgctcctcctgtccgacgccaagcagatggactttgtcgtc
ctaggtctgagagggggacgggtcaggctgtccgccgacctggggaaaggccccgcctct
gtcctgtccaccgccgtcaacgatggacactggcactctgtgagcgccgaggtgagcagg
aggtctgtgtccctgacggtggacggctcccgtcccgccaccgcctcaatcaaagggaac
cacatggacgtggacaggacgctgttcctcggagggctacctgccggtgtgaacggccgg
aggatcggcgtcagcagcagtctccaaggttgtcttcggtctgtcagtctcaacggtacc
atattggatttgtccaagccgttctcacagcatgatgtcacttcctgcttcaccaaggat
cagacaggaagttatttcaacggcagtggacacgctgagctcatgcatgatgggtataag
gtcggcgctgacatggcggtgtctctggagttccggaccagccaatcagaaggcgtcgtc
ctgggcatcagcagcgccaaggtggacgccgttggcctggagatggtggacggacaggtg
gtgttcaatgtgaacaacggggcgggccgcgtggcgctgcgctccacgggccccgtgctc
tgcgacggactctggcaccacctggtggccagaaagacgaagcacggcctgacactgcgc
gtggatgggacacagtacagcgccgctaacccctacccacaatccacctctgccgagacc
aacaaccccgtctatctgggcggggttccagccggcgtgaagcagaactgcctgagcgtc
cgctccgggttcagaggttgcctgaggaacctgcggctcgcccgctctcacctgaacctc
cctctccacctcagctccgcccacttcctgtcgggcgtcacgccggactcctgccctgcc
tcgtag
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