Xiphophorus hellerii (green swordtail): 116711961
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Entry
116711961 CDS
T07363
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116711961 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116711961 (col11a1)
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116711961 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116711961
NCBI-ProteinID:
XP_032407506
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All DBs
Position
21:complement(7207552..7306023)
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AA seq
1810 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSTRTAFVTLTLLLQAACVRAAEPVDVLKALGFQNYPEGVTKV
TGFCANRRASKSDSAYRIARQIQISAPTSQLFPGGVFPEDFSILTTVRPESGLQSFLLSI
YNEQGVQQLGVEVGRSPAFLYEDQTGKPAPEDYPLFTSLNLSNGKWRRVAISVEKKTVTI
IVDCTRKITKPLLRSDQGSISTNGITVFGTRILDEDVFQGDIQQLLIVADPKAAYDYCDH
YSPDCDTPHKDSLQAQEPDEEYITDDIDYRQFYEYSEGPTDSVPTDEYSEKQLNNVEGDY
YTDIDYGTLDGTQTQSPVATSGPSEAVKEDFIGAHATEAPTLAPEPGTVLETGDNSETGA
EEYDFKEYDLNEYDLGKLDNKYDYGTYDEYGPLPSKAPTAYGEEVGPGVAAETDFSESTI
AGSQAAFGQKGEKGEPAVIEPGMLIEGPPGPPGPSGLPGPSGLQGPPGTAGDPGDRGPPG
RAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGPPGSGGLKGESGDHGPQGPRGIQGPPGQPGKVGKRGRAGADGARGMPGEPG
SKGDRGFDGLPGLPGEKGHRGEPGSMGPAGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGPPGPPGVPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLPGLPGADGPPGHPGKEGPPGEKGSQGPLGPQGPLGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGEIGMPGSRGEDGPEGPKGRAGPNGESGPLGPAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRGARGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPSGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
SPGKDGPPGLRGFPGERGLPGATGPSGLKGGEGPQGPPGPVGSPGERGNAGPAGPIGLSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEAGEPG
QKGSKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPIGSVGEKG
EQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGESGEKGEDGEPGQPGPPGPSGEAGPPGPPGKRGPPGALGAEGRQG
EKGAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGASG
PLGPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGIIGPPGPPGPPGEVIQPLPIQSPKKTK
RSSDMQSDAAGGFVDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKIFSYVDADGNPINMVQMTFLRLLTASARQNFTYSCHQSVAWHDAASDSHDKALRFLG
ANDEEMSFDNNPFLQAISDGCSTRNGYGKTVMELNTPKIDQVPIVDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaacgttggcttatggattccact
agaactgcattcgtcactttaacactgcttctgcaggctgcttgtgtcagagcagcagag
ccagtggacgtcttaaaagcgttaggatttcaaaattaccccgaaggagtgacaaaagta
acgggattttgtgcaaaccgaagagcatcaaagtcagactcagcctacagaatcgccagg
cagatccagatcagcgcccccacctcacagttattccctggcggcgtttttcctgaggat
ttctccatcctgaccaccgtgcgccccgagtctggcctccagtccttcttgctgtccatt
tacaatgagcaaggagttcagcagctgggtgtagaggtgggacgctcacctgctttcctg
tatgaggatcaaaccggcaagccagccccggaggactaccccctgttcacctctctcaac
ctttctaatggaaagtggcgccgtgtggccatcagtgttgagaagaagacggtcaccatc
attgtggattgtacgaggaagatcaccaagcctctgctcaggagtgaccaaggctccatc
agcaccaacggcattacagtgtttggcaccaggatcctggatgaggatgttttccagggg
gacatccagcagctcctgattgttgctgatcctaaagcagcatatgactactgtgaccat
tacagcccagactgtgacacgccgcacaaggattcgcttcaggcccaggagccagacgaa
gagtacattactgacgatatagattacagacagttctatgaatactctgaaggaccaaca
gactccgtcccgactgacgaatactctgaaaaacagctaaacaatgtagagggagattac
tatacagacattgactacggaactctagatggtactcagactcagtcacctgttgccacg
agcggaccaagcgaggctgtaaaggaggattttatcggggcgcacgccaccgaagcccct
actctcgctccggagcccggcactgtgttggaaacgggggacaactcggagaccggtgcg
gaagagtatgactttaaggagtatgacctgaacgagtatgacttgggcaagttagacaac
aagtatgattatgggacatacgatgagtacggccccctcccatctaaagccccgacagcc
tatggtgaggaagtggggcccggggtcgctgccgaaaccgacttttctgaaagtacaatt
gctggttctcaagctgccttcggacagaagggcgagaagggcgagccggccgtaatagaa
cctggcatgctgattgaaggaccaccaggaccacccggcccatctggtcttccgggacca
tcgggccttcagggacccccgggcactgctggagatcctggtgacagaggtcctcctggc
cgcgccggtctccccggcgccgacggcttaccgggacctccaggtaccatgctgatgctc
ccatttcgcttcggtggggacggcgagaagggtccggtggtgtcggcccaagaagcccaa
gcacaggccatcctctcccaggccaggctggcgatgaggggacctcctgggccaatgggt
ttgactggaagatctggaccggtgggtccacctggctcaggtgggctgaagggtgaaagc
ggagaccacggtcctcagggcccacgtggcattcaaggaccccctggacaacctggcaaa
gttggtaaaaggggtcgggctggtgctgacggcgctcgtggaatgcccggagagccaggc
tctaagggcgaccgaggctttgatggacttcccgggctgcctggagaaaagggccacagg
ggcgagccggggtcgatgggaccagcaggagccccaggagaggacggacagagaggtgaa
gacggagagattgggcccagagggttagctggagagagcgggcccagaggtttgctggga
cctcgcggtcctcccggaccccccggagtgccgggcgttgccggagtggacgggccaccg
ggtcccaaaggcaacatgggacctcaaggggaaccgggcccaccgggtcagcagggaatc
cctggaacacagggcctccccggtcctcaaggtccgatcggaccacctggagaaaaaggc
cctcagggcaggtcgggactccctggactgcctggagctgacgggcctcctggtcatcct
ggcaaggagggtccacccggagagaaaggttctcagggtccactgggtcctcagggtcct
cttggttatcctggcccccggggtgtaaagggggccgacggagttcgtgggctgaaggga
tcaaaaggagagaagggcgaggacggtttcccaggttttaaaggagatatgggaatcaaa
ggtgaccggggtgaaattggcatgcctgggtcccgtggagaggatggtcctgagggacct
aaaggcagagctggtcccaatggagagtcggggcctctcggtccagcaggagagaaaggt
aaacttggtgtcccaggattgccaggttatcccggacgacagggaccaaagggctcgagt
ggattccccggcttccctggagcaaacggcgagaaaggagcacggggcattgctgggaaa
tctggtcctagaggacagagaggtccaacggggcctcgtggggctcgaggagccagaggt
ccaactggcaaacccggtcccaagggcacagcaggaaacgacggcccccctggcccgcct
ggtgagagaggacctcaaggacctcaggggccagtgggcttccctggaccaaagggcccc
cctggaccatctggaaaggacggccttcccggacaccctggacagcgtggagagacgggt
ttccaaggaaaaactgggcccccaggaccaggaggtgttgttgggcctcagggacccact
ggagagaccggtcctgttggtgagcgcggacatcctggacccccaggcccacctggagag
cagggtcttccgggtgctgctggcaaggagggagccaagggtgatcctggaccgcaaggc
tcccctggtaaagacggtccgccgggccttcgcggcttccccggagagagaggtctaccc
ggtgccacgggcccatctggtctgaagggtggagagggaccccagggtccacccggtcct
gttggttctcctggtgaaagaggtaatgctggtccagccggcccaattggtttatctggt
agacctggtcctcagggtcctccaggtcctgctggagagaaaggtgctcctggtgagaaa
gggccgcagggcccagccggacgtgacggggtccagggtcccgtcggtcttcctggcccc
gctggacctcaaggcccacctggagaggacggtgacaagggagaggctggggagccgggc
cagaaaggaagcaaaggtgacaagggagagcagggcccccccggaccggctggcgttcaa
ggtcctgttggagccccaggtcctgctggagctgacggagagccaggtcccaggggtcag
cagggcatgttcgggcagaagggagacgagggtccgagaggcttccctggacccccgggt
cccattggtctacaggggcttcccggacctccaggtgaaaaaggagaaaacggcgacgtc
gggcccatgggtccccctggtccccctggtcccagaggccctcagggtcccagtggagcc
gacggtcctcaaggtcctccaggtggtgtgggccccataggatctgtgggtgagaagggc
gaacaaggtgaggctggaaacccgggaccacctggagagcctggaactgggggacccaaa
ggtgagagaggagagaaaggagaggccggaccccccggagctgctggacccgccggtgcc
aaaggaccccctggagatgatggtccaaagggcaaccctggacctgttgggttccctgga
gacccaggaccccctggagagccaggtgtcgctggtactgatggagaatcaggagagaaa
ggagaggatggtgagcctggtcaacctggacccccgggtccttctggagaggccggtcca
cctggtccacccggcaagagaggacctcctggagctttaggagccgagggccggcaagga
gagaagggcgccaagggtgaagcgggtgctgagggcccagctggtaaaacaggacctgtt
gggccccaaggacctcctgggaagcccggtccagagggtctgcgtggaatccctggccct
gtgggtgaacaagggctgcccggtgctccaggacaggacggtccaccaggtccaatgggt
ccgccaggtctgccgggcttgaaaggcgaccccggctccaaaggtgaaaagggtcaccca
ggtttgattggcttgattggaccccctggagagcaaggagagaagggagatcgaggtctt
cccggaccccagggcacccctggtggcaaaggtgactctggcatcagtggagcctctggt
ccccttggtccccctggtccccctggtctacctggtcctcaaggtccgaaaggagccaag
ggttcaagtggtcctgccggtccaaaaggagacactggtataataggtcctccaggtcct
cctggcccaccaggtgaggtcatccagccccttcccattcagtcgcccaagaagaccaag
cgctccagtgacatgcagtcagacgccgccggcggcttcgtggattacggcgaaggcatg
gaggacatctttggctcgctcaacaacctcaaacaggacatcgaacgcatgaaatacccc
atgggcacgcagaacaacccggccagaacatgcaaagacctccagctgtgccaccctgag
ttccccgatggcgagtactggattgatcccaaccaaggctgctctggggattcattcaaa
gtctactgtaacttcactgctgggggtgaaacctgcatctatccggataaaaagtccaat
ggggtcagaatatcctcgtggcctaaggaggttccaggttcatggttcagtgaattcaag
cgcggtaaaatattttcctacgtggatgctgacggaaaccccatcaacatggtacagatg
accttcctcagactactgaccgcctcagccaggcaaaacttcacctacagctgccaccaa
tctgtggcgtggcacgacgcggccagcgacagccacgacaaggcgctgcgcttcctgggc
gccaacgacgaggagatgtctttcgacaataacccgttccttcaggccatctcagatgga
tgttcgacaagaaacggctacggaaagactgtgatggagctcaacactcccaaaatcgac
caggttccaatcgtcgatgtcatgttgactgatttcggggacccgaaccagaagttcggg
tttgaagttggacctgtctgcttccttggataa
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