Xiphophorus hellerii (green swordtail): 116713220
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Entry
116713220 CDS
T07363
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116713220 (btaf1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
116713220 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
HEAT_2
Vac14_Fab1_bd
HEAT_EZ
ARM_ECM29
Cnd1
Motif
Other DBs
NCBI-GeneID:
116713220
NCBI-ProteinID:
XP_032409207
LinkDB
All DBs
Position
22:complement(4677672..4711437)
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AA seq
1859 aa
AA seq
DB search
MIMAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNNLLSKVLTYLRSPSWDT
RIAAGQAVEAIVKNIPEWNPAPKPKEESRENLSPEDSSCDRLNFYHFDISRLLRHGASLL
GSAGAEFELQEDKTGEMDPKERLARQRKLLQKKLGLDMGAAIGMDTDELFNDEDLDYSCH
PSGFKAQGFRATAGCSSRNHVTIQAAELIDSEFRPGMSSRQKNKAKRLAKLVAKQKSRDV
DPNEKSNDSIEGEPEEKRRKTTNVVIDQPATEHKVLIDNVPDNSSLLEESHEWPLESFCE
ELCNDLFNPSWEVRHGAGTGLREILKSHGSGGGKLVGSTAEQMSRQHQEWIEDLVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVSLLHMSENSVAMTVDVLLKLLKEDQWEVRHG
GLLGIKYALAVRQDLISVLLPRVLPAITEGLQDLDDDVRAVAAAALIPVVEGLVQLLPNK
VPFIVNTLWDALLDLDDLTASTNSIMTLLSLLLTFPHVRQCSMEQSLTVLVPRVWPFLRH
TISSVRKAALETLYTLLSKADESCAVWINPILQDMLRHIFQSCILESNDEILELIQKVWM
ELLSQVPQQFVVAASCPWMGAWLCLMMQASHIPIDLNMLLEVKARSKDKTGAKARLGNNQ
VKETVQQYIAGAETLSDDSLTRDYVVIRARLMAARLLGALCRCICDPQLNAASQEIRPAE
SLGQLLLFHLNSKSALQRIAVALVLCEWAALQKDCQMVSSMVQPRLLAVLTEQLYYDEIA
IPFTRMQNECKQLISLLAEVHIDLQDRLSSSVFTIDQANELVTTIFTETTAGMNVKSKQW
LALESKRQQAQSTVMETNTEWQQLHLRVHMFTACAAINLEVLPGKLNPLVRPLMETVKKE
ENTLIQSYAASFIAKLLRQCAVRSPCPNPKIIKNLCASACMDPSATPSSACPVPTAQEQA
KGGGLERDGMHHMVNKTQGIITLYRHQRAAFAITSKRGPTPKAPKAPVTELPPGSTISSD
NDENKKQFLVQRRGAEFALTTVAKHFGADLNRSLPYLWENTVGPLKAVAKENLCIDRQAQ
LERGDAAAQELVNSLQVLEVMAGAMAGELRPLLLEHLPHLFTCLQHPYTAVRHMAARCVG
VLSKIATLETMNSFLESVLHWLAAIDDCTKQEGAIEALACVMEQLDVDIVPYIVLLVVPV
LGRMSDPSDSIRFMATQCFATLIRLVPLEAGIPDPPAMSADLIQQKARERQFLEQLLDGR
KLENYKIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDQYL
RAQEYAKTKAADCSPLPSLVVCPPTLTGHWVDEVAKFCSKEFLNPLHYTGPPTERMRLQH
QVKKHNLVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVIL
SGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEA
LHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKASVEDSISAA
SGEEEEKPKLKATGHVFQALQYLRKLCNHPNLVLTPQHPEYNRITDQLACQNSNLRDIQH
APKLSALKQLLLDCGLGGGGGAEGGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPKLPTV
TYLRLDGSVPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR
DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMSIANTVINQENTSLQSMGTD
QLLNLFTLDKDDKSDKGEQSSSTSGKASIKSVLDGLGELWDQQQYDSEYNLDSFMNSLH
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggctgtatcaagacttgaccgtttgtttatcttgctcgacactggaaccaca
ccagtaaccaggaaagcagcagcccagcagcttggagaagtggtgaaacttcacccacat
gaactcaacaacctcctgtcaaaggtgcttacctatctacggagtcccagctgggacact
cgaattgcagccggccaagccgtggaggccattgtgaaaaatattcctgagtggaaccct
gctccgaagccaaaggaagagtcccgtgaaaacctgtccccggaggactcgtcctgtgac
cggttgaatttttaccattttgacatctcccgcctgctcaggcatggagcgtcgctgctc
ggatccgcaggagccgagtttgagttgcaggaagacaaaactggtgagatggatcctaag
gaacgtctggctcgtcagaggaagctgctccagaagaagctgggtctggatatgggagct
gctataggaatggacacagacgagctgttcaacgacgaggacctggactattcctgccat
cccagcggctttaaagcccaaggattcagagctacagctggctgcagctcccgcaaccac
gtgactattcaagctgctgaattgattgactcggagttccggcccggcatgagcagccgt
cagaagaacaaagccaaaagactggctaaactcgtggcaaaacaaaaatccagagacgtg
gatcctaacgagaagagcaatgacagcatagaaggtgaacctgaggagaaacggaggaaa
acaaccaacgtcgtaatcgaccagccggcaacagaacataaggtcttaattgacaacgtt
ccagacaactccagtcttttagaggagtcacacgagtggccgttggagagcttctgtgaa
gagctttgtaacgacctcttcaacccatcatgggaggttcgtcatggtgcgggcacaggc
ctcagagaaatcctgaagtctcatggttctggtggtgggaaactggttggaagcactgca
gaacagatgtcgcgacagcatcaggagtggatcgaggatctggtcatccgtctcctctgt
gtgtttgctttggaccgctttggggacttcgtatctgatgaggtggtggctcctgtcaga
gagacgtgtgcccagacgctcggtgtctctcttcttcacatgagtgaaaacagcgttgcc
atgacggtggacgtcctgctgaagctgctgaaggaggaccaatgggaggtccggcatgga
ggcctgttggggatcaaatatgccttggctgtccgacaggacctgatctccgtcctgctt
ccccgggtgctgcctgcaataacagaaggtctgcaggacctggatgatgatgtcagggcg
gtggctgctgctgctctcatcccagtggtggaagggttggtccagcttctgcccaacaag
gttccttttattgtaaacacactatgggacgcactcctggacctggacgacctcaccgct
tccaccaacagcattatgacgctgctgtctttgctgctgacctttcctcacgttcggcaa
tgcagcatggagcagtcactgactgtcctggttcctcgagtttggccgtttttaagacac
accatatcatccgtaagaaaggctgcgctggaaacgctctacacactgctgtctaaagct
gatgagagttgtgcggtttggataaatcccattttacaagatatgttgcggcacatcttc
cagtcctgtatactggagagcaacgacgaaatactggagctcattcagaaggtgtggatg
gagctgctgtctcaggtcccccagcagttcgtggtggcagccagctgtccttggatgggc
gcctggctctgcctgatgatgcaggcctctcacattcccatagacctgaacatgctgctg
gaggtgaaggcccgctccaaggataagactggagcaaaggctcggctaggaaacaatcaa
gtgaaggaaacggtccagcagtacatagccggggctgagactctatcagacgattcgttg
acgagggattacgttgtgattcgtgccagactcatggccgccaggttgctgggagctctg
tgtaggtgcatctgtgaccctcagcttaatgctgcatcccaggagatccggccagccgag
tctttgggccagctgttgctcttccatctcaactccaaatcagccttgcaacggatagcc
gtggctctggttctctgtgagtgggctgcactgcagaaggattgccagatggtgtcgtcc
atggtgcagccgcgacttctggctgtcctgaccgagcagctgtactacgacgagatcgcg
attcctttcacacgcatgcagaatgaatgcaagcagctcatttcgttgcttgctgaggtt
cacatagaccttcaagatcgcctcagcagcagcgttttcaccatagaccaagccaacgaa
ctggttaccaccatcttcacagagacgacggcaggtatgaacgtgaagtccaagcagtgg
ctggcgctagaaagcaaacgacagcaagcccagtctacggtgatggagaccaacacggaa
tggcagcagctgcatctgcgcgtccacatgttcaccgcctgcgccgccatcaacctggaa
gtgcttcccggcaagctcaaccctttggtgcggccactcatggagacggtcaagaaggag
gagaacaccctgatccagagttatgccgcttcgttcatagccaagctgctgcggcagtgc
gccgtccgctcgccgtgccccaacccaaagattatcaaaaacctctgtgcttcggcgtgc
atggacccctcggccacgccctcgtccgcttgtcccgttcccacagcgcaagagcaggct
aaaggaggtgggctggaaagagatggcatgcatcacatggtcaacaaaacccaggggatc
atcactctgtaccgccaccaacgggccgcgtttgcaattacaagtaaaagaggtccgaca
ccgaaggcgccgaaagccccggtgacggagcttcctcctggcagcacaataagctccgat
aacgatgagaacaagaagcagtttcttgttcaaagacgaggagcggagtttgccctaacg
accgttgctaagcactttggtgcggacctcaacaggagtctgccgtacctctgggaaaac
acggtgggaccgttgaaggcggtcgccaaggagaacctttgcattgacaggcaggcccag
ctggagagaggcgatgcggcagctcaggaattggtcaactctctgcaagttttggaagtc
atggctggagccatggcgggtgaacttcgacctttgttactggaacacctacctcatttg
tttacatgcctgcagcacccgtacacagcggtgcggcacatggccgcgcgctgtgtgggc
gtgctcagtaagatagccacactggagaccatgaacagtttcctggagtctgtgctccac
tggttagctgctatcgacgactgcacgaaacaggagggcgccatcgaagcgctggcttgt
gtgatggagcagctggacgtcgacatcgttccctacatcgtgctgctggttgttcccgtt
ctgggccgcatgagcgaccccagcgacagtattcgttttatggccactcagtgcttcgct
acgttaatccgcctggtgcctctggaggcaggaataccagacccgccggccatgtcagcc
gacttgatccaacagaaagcgagagagcgtcagtttctggagcagctgctggacggcagg
aagttggagaactataagatccctgtgccgattaaagccgagctcaggaagtatcagcag
gacggcgtgaattggctggcgttcctgaacaaatacaagctgcacggtatcctctgtgac
gacatgggcctggggaagacgctgcagtccatctgcattctggcaggagatcagtacctc
agggctcaggaatatgcgaagaccaaggcagcagactgcagccccctgccctcgctggtg
gtgtgtccgcccacgctaacgggccactgggtggacgaagtggccaagttctgctccaaa
gagttcctcaacccgctgcactacaccggacctcccacggagcgaatgcggttgcagcat
caagtgaaaaaacacaaccttgtagtcgcttcttatgatgtcgtgcggaacgacatcgac
tttttcagaaatataaaatttaattactgcatcctggatgagggtcatgtgatcaagaat
gggaaaaccaaactgtccaaagccatcaagcagctagcggctaacttcagggtcatcctg
tcgggaacgcccatccagaacaacgtcctggagctctggtcgctcttcgacttcctgatg
cccggcttcctgggaacagaacgccagttcgccgctcgctacgggaaacccatcctggcc
agccgcgacgccaagagctcatccagagaacaggaagctggcgtcctcgccatggaggct
cttcatcggcaggttctgccgttccttctgaggaggatgaaggaggatgtgctccaagac
cttcctcctaaaataatccaggactattactgcactctcagccctctgcaggttcagctc
tacgaagactttgcgaagtctcgagccaaagccagcgtggaggacagcatctctgcagcc
tccggtgaggaagaggagaagcccaagctgaaggctacgggtcacgtcttccaggcgctg
cagtacctgcggaagctctgcaaccacccaaacctggttctgacgccgcagcatccggag
tacaatcgcatcacggatcagctggcgtgtcagaactccaacctgcgtgacattcagcac
gcgccgaagctctctgctctcaaacagctgctactggattgcggtcttggcggcggcgga
ggagcggaaggcgggacggaggcggtggtggcgcagcatcgcgttctcatcttctgtcaa
ctgaagagcatgctggacatcgtggagcacgacctgctgaagcccaaactgcccaccgtc
acctacctgcggctggacggcagcgtgccggccggccagcgccactccatcgtctccagg
tttaacaacgatccctccattgatgtgctgctgctcaccacccatgtcggtggtctgggt
ttgaacctcaccggcgcagacactgtggtgtttgtggagcacgactggaaccccatgagg
gacctgcaggccatggaccgtgcccatagaataggacagaaacgggtggtgaacgtttac
cggctgattacgcgaggtacgctggaggagaagatcatgggactgcagaaattcaagatg
agcatcgccaacaccgtcatcaaccaggagaacaccagcctgcagagtatgggcacagac
cagctgctcaacctcttcactctggacaaggatgacaagagtgacaaaggagagcagtcg
tcatcgacctcagggaaggcgtccataaagtctgtgttggacggcctcggggagctgtgg
gaccagcagcagtacgactcggagtacaacctggacagcttcatgaactcgttgcactag
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