Xiphophorus hellerii (green swordtail): 116713333
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Entry
116713333 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8-like
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116713333
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
116713333
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
116713333
NCBI-ProteinID:
XP_032409356
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All DBs
Position
22:complement(26805191..26829896)
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AA seq
1947 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVTPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVSSQSGQSKAAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPTRRLELASQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEAAY
PLEGITYCSADKKNSPFCWPRAMQFQRGVKAAAGAAGEPSEAGAASKAEGGVVLDYKGRG
NGHFSQQEVAVRPKETILSKRKGLSLSGGGGMLVRLGGSVSLSLEDGGGKCMYKGAASSS
GGKLKLTQGGGKVPSAGGPGGSGGLGSGKHSNAKRRTSSEDSSLEPDLADLSLDDSCNLA
LGAEACNTFEFLPAPVEVLPSPSPLLRDLPKYSRGGGGSKSFDMKHAGHVPAALTAAESA
PACFTAKEHMEVAVDTVEGFTEPNGRSEDMPSSCTGTARPGSPPASAKVPWGNREAEPAA
VEAAGAAAANQGAEAAGGASEGEALAEDDYQAYYLSAASEEGADKQLADSHQEEEPDIFA
GIKPLEQAGRMEVLFACAEALYAHGYSNEACQLAVELARDLLANPPDLKVEQPQTKGKKS
KVSTSRQTQVATNTLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLA
YQESEVVALLKKIPLGLVEMSAIRERAEQLRDGNLCDYRPVLPLMLASFIFDVLCTPVVS
PTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRRVKGDLALALM
ITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAGGSQRSPSKHTTGSHSGIGGS
AGGVTKHALSSSSSNTLAASSSSSSSAVALAGEEVTSQVELSLLQNSTGGENAADTKEHV
SDGAQLSSEQQNETASFKPEATVPSRLALGGRCGYSQRCWGSPVRQKKKHTGMASIDSSA
PETTSDSSPTLSRRPLRGGWAAASWARGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAK
STDTSRYKGRRLECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGH
QGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECW
DGHLTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNV
MLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQSVGGGAGQQRDPPGRCGANGSSGR
RPPDATCGVLDGVANMDSSGVGAVTASVTAAAIVPVISVGSTIYQSHAIPGQAMSHPHSQ
GLHPYTTIQAHLPSVCTPQYLGHPLQHVPRPAVFPVSGASYPQGIHPAFIGAQYPFSMAP
GPQPSLSAAAVTFPAVPVPSMTQIAVHPYHTEQGLPLSTTVAVGSVHSGPTIQAIQGASL
PAVSPQPAPLVSAPFTAEDEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNF
SRSPPYTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHA
HLRTPAFHQLVQRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFND
VLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgtttgctgagtgggaggatggggagaggttctccttcgaagactcagac
aggttcgaggaagactccctgtgctccttcatctccgaggccgagagcctctgccagaac
tggagaggatggaggaagcagtccgccgggcccaactccccgaccgtcaagattaaagat
ggccaggtgactcccctggtggagttatcggcgaagcaggtagctttccacatcccgttc
gaggtggtggagaaggtgtaccccccagtcccggaacagctccagctccgcattgccttc
tggagcttcccagagaatgaggaggacatcaggttgtattcctgcctggctaatggcagt
ccggatgagttccagcgtggagagcagctgtacaggatcagagccgtcaaagaccccctt
cagatcggcttccatctcagcgctaccgtagtgtccagtcagtctggtcagtctaaagca
gcctacaacgtggccgtcatgtttgaccgctgccgcatcacttcctgcagctgtacctgc
ggcgccggggcaaaatggtgtgcccacgtagtcgctctctgccttttcagaatacacaat
gcttcagcagtctgtctgagggctccggtgtcagagtctttatccaggctgcagagggac
cagctccaaaagtttgcccagtacctcattagtgagctgcctcaacagatcctacctaca
gcccaacgtctgctggacgagttgctgtcttctcagtctacagccatcaacactgtgtgt
ggagctccagatccgactgcagggccttcagcatctgatcagagcacctggtatctggac
gagtcgaccctcagcgataacattaaaaagactttgcacaagttctgtgggccctctcct
gtcgtgttcagtgatgtgaactccatgtacctgtcctccactgagcctccggcagctgct
gagtgggcgtgcctgctgcgccctctgaggggccgggaaccagagggcatctggaacctt
ctgtccatcgtcagggaaatgtttaagaggcgagacagcaacgctgcgccactgctggag
atcctcactgaacagtgccttacctatgaacagatcatcagctggtggtacagcgtcaga
acctcggcgtcccacagcagcgccagcggccacacggggcgcagcaacggccaatcagag
gtggcggctcacgcctgtgccagcatgtgtgatgagatggttgtcctgtggaggctggcg
gtgcttgatcctaccatgagccccaccaggcggttggagctggctagccagctgaagcag
tggcatctgaaagttatagagatcgtgaaacgaggacaacatcgaaagtcgctggataaa
ctcttccaaggcttcaagcccgctgtggaatcctgctacttcaactgggaggcggcttat
ccgctggaaggcatcacctactgcagcgcagacaagaagaacagcccgttctgctggccc
agggccatgcagttccagaggggagtgaaggctgccgccggagcggccggcgagccttct
gaagcaggagcagcgagcaaagcagagggcggagtggtgctggactacaaaggaaggggg
aacggccatttctcccagcaggaggtggctgtgagaccaaaggagactattctgagcaaa
cggaaaggtttgtcactgagtggaggaggagggatgctggtccggctgggggggagtgtc
tctctgtctttagaggacggtggggggaagtgcatgtataaaggagctgcttcctcctcc
ggaggcaaactgaagctgacccagggaggagggaaggttccgtcggctggaggtcctggg
ggcagcggagggttgggaagtggtaagcattccaacgccaagcgcagaaccagcagtgag
gacagctctctggagcctgacctggctgacctcagtctggatgacagctgtaacctggct
ctgggagccgaggcctgcaacaccttcgagttcctccccgccccggtggaggtgctgccc
tctcccagcccgctgctccgagacttgcccaaatacagcagaggcggcggcgggagcaag
agttttgacatgaagcatgcgggtcacgtccctgcggcactgactgctgcagagtctgct
ccagcctgttttactgctaaagaacacatggaggtggctgtggacacggtggaggggttc
actgagcccaacggcagaagcgaagacatgccgtccagctgcactgggacagccagacct
ggcagccctccagcttccgccaaggtgccatggggcaacagggaggcagaacctgcagct
gtagaagcagcaggtgcagcagcagctaaccagggggcggaggctgcaggtggagcttct
gaaggagaagctctggctgaggatgactaccaggcgtactacctgagcgctgcatcagag
gagggagccgacaagcagctggccgacagccaccaggaggaagagccagacatctttgca
ggaattaaacctctggaacaggcaggacgcatggaggtgctgtttgcatgtgctgaagcc
ctgtatgctcatggctacagtaatgaggcatgtcagctggctgtggagctggccagagac
ctgctggccaatcctcctgacctgaaggtggagcaaccccagaccaagggaaagaagagc
aaggtgtcgaccagccgtcagactcaggtggccaccaacactctgtctaaagctgccttc
ctcctcacggtcctcagcgagaggctggagctccacaacctggctttcagtaccggaatg
ttctccctggagctgcagaggccgcctgcctctactaaagctctggaggtgaagctggcc
taccaggagtctgaggtggtggcgctgttgaagaagattcccctgggcctggtggagatg
tcggccatcagagagcgagccgagcagctcagggacggaaacctctgtgattatagaccg
gtgctgcctttgatgttggccagtttcatatttgacgttctctgcaccccagttgtgtcc
ccaactggttcccgtccacccagtcgcaaccgaaacaatgagatgcccggggacgaggag
ctgggctttgaagctgctgtagctgctcttggtatgaagacgacagtcagcgaggcagag
catcctttgctctgtgaaggaactcggcgggtgaagggtgacctggctttagccctcatg
atcacctacaaggatgaccaaagcaaactcaagaagatcctggataagctgctggacagg
gagagccagacccacaagcctcagactctgagctcattctactccagcaagccagcaggg
ggcagtcagcgcagcccgtccaaacacactactgggagccacagcgggatcggaggctcc
gccggaggggtcaccaaacacgccttgtcatcgtcctcatctaacaccttggctgcgtct
tcctcaagctcttcctctgctgtggctctggctggggaggaagtgacctcacaggtcgag
ctcagcctgctgcagaacagcacaggcggggagaacgctgctgacaccaaggagcatgtt
tcagatggagcacagttatcaagtgagcagcagaatgaaacagcgtcctttaaaccggag
gccacagttcccagtcgactggctctaggggggcgctgcggctacagccagcgttgctgg
ggctcgcctgtccgccagaagaagaaacacactggcatggcgagcatagacagcagcgct
cctgagacgacctcagacagctccccgaccctcagccggaggccgctccggggtgggtgg
gcggcggcgtcctgggcacgcggacaggacagcgacagcatcagcagctcttcatcagac
tcgctgggctcctcatcctccagtggttcacgcagggctgggggcggggctagggccaag
agcactgacaccagcaggtataaggggcgccgccttgagtgtcatgcaccccatgtgccc
aaccagccctccgaggcagcagcccatttttactttgaactggccaagacggtgctgatc
aaagccggagggaactcctccacctccatcttcacccagccctcagccagcggcggtcac
caggggccacacaggaacctccatctctgtgccttcgagattggactgtacgctcttggc
ctccacaattttgtttcgcccaactggctgtccaggacctactcatctcatgtctcctgg
ataactggccaagcgatggagattggcagcgcagccctgaatatcctggtggagtgctgg
gatggccacctgactccaccagaggtggcgtccctggcagaccgggcatcacgggccagg
gaccccaacatggtccgggcagccgcagagctggcgctcagctgcctgcctcacgctcac
gccctcaaccccaatgagatccagagagccctggttcagtgcaaagaacaggacaacgtg
atgctggagaaggcctgcatggccgtggaggaggcagcgaagggcggcggcgtgtatcct
gaggtcctgttcgaggtggcccatcagtggtattggctgtacgagcagtcggtgggcggc
ggtgctggccagcagcgggatcctccaggccgctgtggggccaacgggagctctggccgg
aggcccccagatgccacctgcggtgtgctggacggcgtagccaacatggactcttcgggg
gtgggagcggtcactgcttcggtcactgcggcggccatcgtccccgtcatctctgtgggc
tccaccatttaccagtcccatgctattcctggccaggccatgtcccacccccacagtcag
ggactgcacccctacaccaccatccaggcacacctcccctccgtctgcaccccgcagtac
ctgggacaccctctgcagcatgtaccccggcccgctgtcttccctgtgtctggggcttca
tatccacaggggatacatccagctttcatcggggcccagtaccccttctcaatggctccc
ggcccccagccctctctgtccgctgcggccgtcaccttcccagccgtcccggtgccgtcc
atgactcagatcgccgtccacccctaccacaccgagcagggcctgcccctgagcaccacc
gtggcagtgggcagcgtccactctggccccaccattcaggccatacagggggcatctctg
cctgctgtctccccccaacccgctccgctggtgagcgcccccttcacagcagaagatgag
cagcacagccagccaatcagccagcagggcctgcactacctgcactcggcctacagagtt
ggcatgctggcgctggagatgctgggcaggagggctcataacgaccatcccaacaacttc
tccagaagtccaccttacactgaagatgtaaagtggctgctgggactagctgcacggcta
ggagtcaactatgtgtaccagttctgtgttggagcagccaaaggagtcctcagtccattc
gtcctgcaggagatcatcatggaggctctgcagaggctgaatcctgcccacatccacgct
cacctccgcacgcctgctttccaccagctggtgcagcgctgccagcaggcatacctacag
tacatccaccatcgactcatccacctgacacctgctgactatgacgacttcgtcaacatc
atccgcagcgcccggggggcgttttgcctcacgccggtggggatgatgcagttcaacgac
gtgctgcagaatctgaagagaggcaaacagaccaaggagctgtggcagcgcatctcgctg
gagatggccacattctccccgtaa
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