Xiphophorus hellerii (green swordtail): 116713350
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Entry
116713350 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p100 subunit-like
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116713350
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
116713350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116713350
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
116713350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
CIS_TMP
Motif
Other DBs
NCBI-GeneID:
116713350
NCBI-ProteinID:
XP_032409384
LinkDB
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Position
22:complement(146724..157702)
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AA seq
1015 aa
AA seq
DB search
MAELQEITLLFESLKDSGVQNESCRSSVVHVSPVQLSRTNRTVLQQNSGEPEARRRSKPI
PGNHSRRKFRTGSPPSSSCASLTLLGSVREFLRTEADSQSEERNQEKPGRRKIRSSSSSP
PDMAGALRMTEPQFVSYGDDNMQLVNFLPYDFIPPMEIKTEPYIPETAHGPYIQIIEEPK
QRGFRFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHTDPARVHAH
SLVGRHCNENGTCSLDIGPNDLTASFSNLGILHVTKKGVVEVLTRRLRDERRRQKGTHCS
LTDGESILKEAKELGKVMDLNIVRLRFTAFLQDSNGGFTRALKPVVSNPIYDSKSPNASN
LKISRMDKTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDEEGCWEAFGDFSPTDVHKQYA
IVFKTPPYHNAEIERPVTVFLQLRRKKAGDSSDPKQFTYVPQVQDKEEVQRKKQKPLPHY
DSWRGGRGRDGGPGAGGFGSGPGGPGGPGFQFSQMNGGPGGGAFYTGAFTGFTSGGGAQM
SGSAPPASGSAPQQVEGPPGSAVQQQLLRIAASLSSQVSQSARQTAAALLQYCSTGDARV
LLALQRHLCGIQDANGDTPLHLAIIHQQTAVIQQLIQTLLSSQQHAVLNTCNHLQQTPLH
LAVITRQLKVAEVLLRAGADPTLVDKDGRSPLHLAALAGDTATLRLLLAHLGERHAHLVN
TPDYHGLQPLHLAVRRDGERCLRLLVEGGAKINAAELKSGNTPLHLAVRENLFKVACTLI
TELKADVNTCTFGGNTPLHLAASLGFPTLCSMLIAAGADKNMENDEPLYFGSSDEEAEPD
EPVRGDDEQPIISRKRRARGHTPLDLATCQKVRNLLTAKRSPKPSCHADKKIRTGSEDGE
RSGLDEETLSRLVAVLSVGDVPWMKLAEKLGMMTLTHLYEDSDTPCQHLLQHYKLGGGPV
EGLVEALQALGLTEGVRLLRNTELRDDKHSSDATVDSGFSSQPMEEQQEEEMTNQ
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacttcaggaaattactttactgtttgagtccctgaaggacagcggtgtccag
aacgagtcctgcaggtcctctgtcgtccatgtgtctccggtccaactcagcagaaccaac
agaacggttcttcagcaaaattctggagaaccggaggcccggcggaggagcaaacccatc
cccgggaaccatagcaggagaaaattccgaaccggaagtcccccgtcctcctcgtgcgcc
agtttgacgcttctgggttcagttcgggagtttttgcgaacagaagcggacagtcagagc
gaagaaagaaaccaggaaaaacccggcaggaggaagatccggtcctcctcttcctcacct
ccagacatggccggagcgctcaggatgactgaacctcagttcgtgagctacggagacgac
aacatgcagttagtaaacttcctcccctatgacttcattcctccgatggagatcaagacg
gagccgtacatacctgagacagctcacggtccatacatccagatcattgaggaacccaaa
cagagagggttccggttccgttacgagtgcgagggcccgtcccacggcgggttgccgggg
gcgtccagcgagaagaaccggcggacttacccgaccgtgaagatcaacaactacgtgggc
cacgcccgggtggaggtccagctggtgacccacaccgacccggcccgggtccacgctcac
agcctggtgggacgccactgcaacgagaacgggacctgcagcctggacatcggacccaac
gacctgaccgcctcgttcagcaacctgggaatcctccacgtgaccaagaagggcgtggtc
gaggttctgacccgacggctccgagacgagaggcggagacagaaaggaactcactgttcg
ctcacagacggcgagtccatcttgaaggaggccaaggagctggggaaagtcatggacctg
aacatcgtccgtcttcgcttcaccgccttcctgcaggacagcaacggcggcttcaccagg
gcgctcaaacccgtggtgtccaaccccatctacgacagcaagtctcccaatgcatccaac
ctgaagatctcgcgcatggacaagacgtgcggatcggtgctgggaggagacgagatcttc
ctgctgtgtgacaaagtccagaaagacgacatcgagatccgtttctatgaggaagacgag
gaaggatgctgggaggccttcggggacttctctccgaccgacgtccacaagcagtacgcc
atcgtgttcaagacgccgccgtaccacaacgccgagatcgagcggcccgtcaccgtcttc
ctgcagctgcgccgcaagaaggccggcgacagcagcgaccccaagcagttcacctacgtc
ccgcaggtccaagacaaagaggaagtccagaggaagaagcagaagccgctgccgcactat
gactcctggagaggagggcgagggcgcgacggagggcccggcgccggcggcttcggatca
ggaccgggaggacccggaggaccaggtttccagttctcccagatgaacggagggccagga
ggcggagctttctacaccggagccttcacaggcttcacctcagggggaggagcccagatg
tcaggctccgcccctccggcttcaggctccgccccccagcaggttgagggcccgccaggc
tcggctgtgcagcagcagctgcttcggatcgccgcctccctcagcagccaggtgtcgcag
agcgcccggcagacggccgccgccctgctgcagtactgcagcaccggagacgcccgcgtc
ctgctggcgctgcagagacacctgtgtggcatccaggatgccaacggagacacgccgctg
cacctggccatcatccaccagcagacggccgtcatccagcagctgatccagacgctgctg
agcagccagcagcatgccgtgctcaacacctgcaaccacctgcagcagacgccgctccac
ctggcggtcatcacgcggcagctgaaggtagcggaggtgctgctgcgggcgggggccgac
cccaccctggtggacaaagatggccgcagcccgcttcacctggctgcgctggccggagac
acggccacgctgcgcctcctgctggcccacctgggagagcgccacgcacacctggtgaac
acgccggactaccacggtctgcagccgcttcacctggccgtcaggagggacggcgagcgc
tgcctccgcctgctggtagagggcggagccaagatcaacgccgccgagctgaagagcggg
aacacgccgctgcacctggccgtcagagagaacctgttcaaagtggcctgcacgctcatc
actgagctgaaggccgacgtcaacacctgcaccttcggaggaaacacgcctctgcacctg
gcggccagcctgggcttccccacgctctgctccatgctgatcgctgcaggtgccgataag
aacatggagaacgacgagccgctgtactttggctcgtcagacgaggaggcggagccggac
gaaccagtcagaggagacgacgagcagccaatcatcagccggaagaggcgggccagaggc
cacacccccctggacctggccacctgtcagaaggtgaggaacctgctgaccgccaagcgg
agcccgaagcccagttgccacgccgacaaaaagatccggaccggcagcgaagacggcgag
cggtcgggattggacgaggagacactgagccggctggtggcggtgctgagcgtcggcgac
gttccctggatgaagctggccgagaagctgggcatgatgacgctgacgcacctgtacgag
gacagcgacacgccctgccagcacctgctgcagcactacaagctgggtggaggtccggtt
gaaggcctggtggaggcactgcaggctctgggtctgacggagggagtccggctgctgagg
aacacggagctgcgagacgacaagcacagctcagacgccacagtggacagcggcttcagc
agccagccaatggaggagcagcaggaggaggagatgaccaatcaatga
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