Xiphophorus hellerii (green swordtail): 116713446
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Entry
116713446 CDS
T07363
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
116713446 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116713446 (ercc6)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116713446 (ercc6)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116713446 (ercc6)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
116713446 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Pneumovirus_M2
Spt5-NGN
CNOT11
Motif
Other DBs
NCBI-GeneID:
116713446
NCBI-ProteinID:
XP_032409505
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All DBs
Position
22:14200431..14218922
Genome browser
AA seq
1451 aa
AA seq
DB search
MPVEAAEPQASSSFSSPVSAALTPGSLEEDGSARGSAVCTFPENGHGSEAAAAYPANTGP
GEGNIAGKRSGTLLQIDRQRIQVASASSGADELQGLGVFVYDQDVLEQGVLQQVDEAIHE
ASQAAAKAEAEKEYQSVLDDVRSVTSSLKHINKIIEQLSPYAASSKDISRKIESVKRQKE
NKEKQLKKVRAKQKRLQAILGGEDIQRVEAELLAEDDEEEESGPSTLGSMLMPAQETEWE
ELIRKGHMTPFGTRIPQKEVKKEPRKLMLAENSAFDQYLADQAKLATERKKVPLLKKKKS
SALHLHERTKTGKTVSSPKDKKLKKRMRKLQINALKTHPKARPKAEPKLPKPRRKQHTEG
EQTDSEGSEYLPSDEGLDLDQEEREAMNEGFGDSNEDDEYELKPYKKKTVGTGRKKMKKN
DSEDEYSPESSDDDDDNNRGRSKKYKDDGDVDYYRQRIRKWKRQRIREREEKRERGEELT
DDSDAEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVISFL
AGLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFTSN
KEKLIPEIAAGHGILITSYSAVRNLQDILQRYDWHYVILDEGHKIRNPNAGVTVACKQFR
TPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQT
AFKCACVLRDTINPYLLRRMKDDVKANLSLPDKNEQVLFCRLTDEQRQVYQSFLDSKEVY
QILNGDMQVFSGLIALRKICNHPDLFSGGPRILRGIPEDQLTEEEHFGFWKRSGKLMVVE
SLLRLWFKQGQRVLLFTQSRQMLDILEVFVREKDYSYLKMDGTTAIASRQPLIARYNEDK
SIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTIYRLLTA
GTIEEKIYHRQIFKQFLTNRILKDPKQRRFFKSNDIYELFTLADPDGTQGTETSAIFAGT
GSDVKVPKKPDRLKSSPSINGISHDYRPSAGKQRESGAENRNALSLVHSSISPSSGNSQG
KSSMPTDSRSINQNAKNIEMSNSPNTLLVRDGNDSGLVERANKSPTSTSCHQHRDKDRGK
HREKRKHCDSTGTDRHRHKKRKHSRDARFEGHRISHLVKKSTFNKQENEETSTEDQKKCD
DYVLAKLFRKSGIHSVMQHDSIMESSNPDYVLVEAEANRVAKDALKALKISRHQCRLAYN
RPPPPPTKKRFGQKKNSLLVTSSAQPVATSVKCKDAAVVKKSISKKPTSGAHFSGEGADN
DSNSALLSSVSLLAKMKARNHIAKPSSQGAAAAAAEEEEEEQEENGPGAPGTSSPPAPPT
EHDELLVDLRNFVAFQASVDGEATTQEVLEYFKPRLTQKQAPVFRELLRSICDFHRTCGQ
EGIWRLKENFR
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtagaagctgcagagccccaggcgtcctcctccttctccagcccggttagtgct
gctctcactccaggaagtttggaggaggatggatctgcaagaggatctgcagtctgcact
ttccctgagaacggtcatggttcggaggcagctgcagcctaccctgccaacactggaccc
ggggagggtaacattgctggcaaacggtcggggaccttgctgcagatcgaccgtcagcgc
atccaagtggcatctgccagctccggagcagatgagctgcaaggccttggtgtgtttgtg
tatgatcaggatgtcctcgagcaaggtgttctgcagcaagtggatgaggcgatccatgaa
gcgagtcaggctgcggcgaaagctgaggctgagaaggagtaccagtctgtgctagatgat
gtcaggtctgttacatcatctttaaaacacatcaacaagattattgagcagctgtctccc
tatgcagcctccagcaaggatatcagcaggaaaattgagtctgtaaaacgacagaaagaa
aataaggagaaacagctgaaaaaagtaagagcgaaacagaagcgacttcaggccatactg
ggaggagaggacattcagagagtggaagctgagttgttggcagaagatgatgaagaagaa
gaatctggaccatccacgctgggcagcatgctcatgccggcacaggagaccgaatgggag
gaactcatccggaaaggtcacatgactcctttcggtacccgaattccacagaaggaggta
aagaaggagcctcggaaactgatgctggctgagaactctgcgtttgaccagtacctcgcg
gaccaggccaagttggccacagagcggaagaaggtacctcttcttaagaagaagaaaagt
tctgcactccaccttcatgagaggaccaaaacaggaaaaaccgtctcctcacccaaggac
aaaaaactgaagaagcgcatgcgaaagctgcagataaatgctttgaaaacccatcctaag
gctcgacccaaggctgagccaaaacttcctaagcctcggaggaaacaacacacagaggga
gagcagacagacagtgaggggtcagagtacctgcccagtgacgagggactggacttggac
caggaggagagggaagccatgaatgagggctttggggatagcaatgaggatgacgaatat
gaactaaaaccgtacaagaagaaaactgtggggacaggaaggaagaaaatgaagaaaaac
gacagtgaggatgaatactcccctgagagttcagacgacgacgacgacaataaccggggt
agatcaaaaaaatataaagacgacggggatgtggactactacaggcagcgaataaggaaa
tggaagcgacagcggattcgagaacgagaggagaagcgagaaagaggggaggagcttaca
gacgacagtgacgcagagtttgacgaaggcttcaaagttcctggtttcctttggaaaaaa
ctgtacaagtaccagcagaccggtgtgcggtggatgtgggaactccactgtcagcaggca
ggaggcatcctgggagacgagatgggattgggcaaaactatccaggtcatcagctttctg
gcaggactaagctacagtaaactgaggactagagggtccaactacagatacgtcggttta
ggtccaacggtgatcgtgtgcccagccactgtgatgcaccagtgggtgaaggagttccac
acctggtggcctcctttcagagtggcagtcctgcatgaaaccggttctttcaccagcaac
aaggaaaagttgattccagagatagcagcgggtcatggcatcctgatcacatcatattca
gcagtgagaaatttgcaagacatcttacagcgctatgactggcactatgttatactggat
gagggccacaagatcaggaacccaaatgctggtgtgactgtcgcctgcaaacagtttcgc
actcctcacagattcatcctgtccggctcaccgatgcagaacaacttgaaggagctgtgg
tctctgtttgacttcgtcttccctggcaaactaggaacacttcctgttttcatggagcag
ttttctgtgccaataactatgggaggatatagcaacgcatcacctgtccaggtccagacg
gcgttcaagtgtgcatgtgtgttgagggacacaataaatccttacctgctcaggagaatg
aaggacgacgtcaaggccaacctctccttgcctgacaaaaacgaacaggtgctgttctgc
aggttaacagatgagcagcggcaggtttatcaaagcttcttagattccaaagaagtctac
caaatactaaatggcgacatgcaggttttctcgggtttgattgcgctgcgtaagatctgc
aaccacccggaccttttctccggcgggccccgaatcctgaggggaatcccagaggaccag
ctgactgaggaggaacactttggcttttggaaacgctcgggcaagctgatggtggttgag
tcgctgctgcgcctctggttcaaacagggccagcgggtcctgctcttcactcagtctaga
cagatgctggacatcttggaggtgtttgtgagggagaaggactactcgtacctgaaaatg
gacggtacgaccgcgattgcttcccgacagccgctcattgctcgctacaacgaggacaaa
tccatttttatcttcctgctgaccactaaagttggtggtctgggagtcaatctgactgga
gccaacagagttatcatttatgatccagactggaaccccagcaccgacacacaggctcga
gaacgagcgtggaggattggtcaaaagcagcaggtaacaatctacaggctgctgactgca
gggaccattgaagagaaaatctaccacaggcaaatcttcaagcaatttctcaccaatcgc
attctaaaggatcccaaacaaagacggtttttcaagtctaatgacatctacgagcttttt
actttggctgatcccgacggaacgcagggaacagagaccagtgccatatttgcaggcact
gggtctgacgtaaaagtacccaagaaacctgacaggttaaagtcctcaccctccatcaac
ggcatcagccatgattatagaccgtctgcaggaaaacagagagaatccggtgcagagaac
agaaacgcattatcattagtacactccagcatatctccatccagtggaaactctcagggt
aaatcaagcatgccaacggacagtcggagcattaaccaaaatgcaaaaaatatagagatg
agtaattctccaaatacgcttcttgtaagagatggtaatgattcgggtttagttgagaga
gcaaacaaaagcccaacctcgaccagctgccaccagcacagagacaaagacagaggaaag
cacagggaaaaaagaaagcactgtgactccacgggtacggacagacacaggcataaaaaa
cggaagcactcccgggatgctcggttcgaaggccaccgcatctctcatctggtgaagaaa
agtactttcaataaacaagaaaatgaagagacttcgacagaagaccagaagaaatgcgac
gattacgtcttggcaaagctctttaggaaatccggtatccacagtgtgatgcaacatgac
agcatcatggagtcatccaacccggattatgttctagtggaagcagaagccaacagggtg
gctaaagatgcactcaaagcccttaagatttctcggcatcagtgcaggttggcttataac
agacctcctcctccgcctactaagaaacgttttggacaaaagaagaattcacttttagtc
acatcttctgctcagcctgtcgccacttctgttaaatgcaaggatgctgctgttgtgaag
aagtctatctcaaagaagccaacttcaggagctcattttagtggggaaggagcagataat
gattcaaactcagccctgctgtcgtccgtttcactgctggccaagatgaaagctcgaaac
cacatcgctaagccttcctcccagggagcagcagcagcagcagcagaggaggaagaagag
gaacaggaggagaatggccctggagctccaggaacaagctctcctcctgctccccccact
gagcacgacgagctgctggtggatctgcgcaactttgtggccttccaggcgagtgtggac
ggcgaggccaccacacaggaggtgctggagtatttcaaacccagactgacccagaaacag
gcgcccgtcttcagagagctgctcaggagcatctgtgactttcacaggacctgcggtcag
gagggcatctggaggctgaaggagaactttcgctga
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integrated database retrieval system
