Xiphophorus hellerii (green swordtail): 116713775
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Entry
116713775 CDS
T07363
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
116713775
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116713775
Ion channels [BR:
xhe04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
116713775
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GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
116713775
NCBI-ProteinID:
XP_032409907
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Position
22:16889407..17050097
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AA seq
1338 aa
AA seq
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MLAEAHGTDPHGSDSSMRTSSIDNNNNPDSSILISKMEGVVIPYTSEVPCDDYGQRMWWA
FLASSMVTFFGGLFIILLWRTLKYLWTVCCHCNIKNKEAQKVNNPANNPTADKTTKGPDE
KEEAAASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQ
NFYKDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRS
WLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDP
WENFENSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEI
IELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNIS
PNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIM
RVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQG
LSTMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYVKLK
LLLIAIEFKSEQRESRSRKRILINPGNHVKLQEGTLGFFIASDAKEVKRAFFYCKACHDD
ITDPKRIKKCGCKRLIYSKMSVYKRMKLACCFDCGRSERDCSCMSGSVHSNMDTLQRAYP
LSSVSVHDCATTLRAFSSAKYKYNGFVRSPADGATTPRNSGSQKEAGVRFKADCNLVEDE
HPSTLSPKKKQRNGGMRNSPNCSPKMMSRHDPLLIPGNEQIENMDMNVKRYDSTGMFHWC
PSKEIEKVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIV
FVGSLDYLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIEDASL
QDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDSSPVHGFVRQASVTTGSN
IPIITELAKPGKLLPLVSLSQENKSGTSIQMITELVNDSNVQFLDQDDDDDPDTELYLTQ
PFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALLAEENALRGGYSTPQ
TLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLGTPSQ
CTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQSRTSLSHSSHSSHSSSKKSSSVHSVP
PSNRQNRSSKSREAREKQNATRMNRMGQEKKWFTDEPENAYPRNIQIKPMSTHMANQVNQ
YKSTSSLIPPIREVEDEC
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgctagccgaggcacatggcacggatccccatggaagcgacagctctatgaggacaagc
agcatcgataataacaacaatccggactcttcgatcttaatatccaagatggaaggcgtt
gtcatcccctacacgtctgaggtgccatgcgacgactatggacagcgcatgtggtgggca
ttcctcgcctcctccatggtgacgtttttcgggggtctcttcatcatcctgctatggagg
accctgaagtatctgtggactgtctgctgccactgcaacataaaaaataaggaggctcaa
aaggtgaataaccctgccaacaatccgacagcagacaagacaacaaaaggtcctgatgag
aaggaggaggcagcagccagcgaggtgggatggatgacttcagtcaaagactgggctggt
gtcatgatctccgctcagacactcacaggcagggttctggtggtgttagtctttgctctc
agcattggagcccttggaatatactttatagactcctcagatcctatagaatcctgccag
aacttctacaaagattttacactacaaatcgatatggccttcaatgtcttcttcctcctg
tactttggcttgcggtttatagcagccaatgacaagctgtggttctggctggaggtcaac
tcagtggtcgacttcttcaccgttcctcctgtgttcgtctctgtatacctaaacagaagc
tggcttggtttaagatttctgagagcactaagactgattcaattctcagaaatattacag
ttcctaaatattttgaaaacaagcaattccatcaagctggtgaacttgtgttccatcttt
ataagcacgtggctcacggcggctggatttatacatctggtggaaaactcaggggatccg
tgggaaaactttgaaaattcccagtcgctgtcttattgggaatgcgtctacttgctgatg
gtgacgatgtctacagtgggttacggggatgtctatgcaaaaaccaccctgggccgcctg
ttcatggtcttcttcatccttggtggtttggccatgtttgccagctacgtccctgaaatc
atagagttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggaga
aagcacattgtggtctgtggtcatattaccctcgaaagtgtctccaacttcctcaaagac
ttcctacacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcc
cctaatcttgagctggaagccttgttcaaacgccattttactcaagtcgagttctaccag
ggatcggttctcaaccctcatgatttggcccgagtaaagatcgagtcagcggatgcctgt
ctaattttggccaacaaatattgtgcagatcctgatgctgaagacgcttctaacatcatg
agggtcatatccatcaagaactatcatcccaagatcagaataataacacagatgctacag
tatcacaataaggcccatctgctgaacattcccagctggaactggaaggaaggtgatgat
gctatatgcctggctgagctgaaggctggtttcattgcccagagctgtctggcacagggc
ctgtcgaccatgctggccaatctcttctccatgaggtccttcattgagattgaggaggac
acatggcagaagtattacctagaaggagtagctaatgagatgtacacagagtatttgtcc
agtgcctttgtaggcctctccttccccactgtgtgcgagttgtgctatgtgaagttgaag
ctgttgcttattgccattgaattcaagtctgagcagagagagagcagaagccgaaagcgc
atcctcatcaatccaggcaatcacgtcaagctgcaagagggaacactgggattctttatt
gctagcgatgccaaagaagtaaagcgagcatttttctactgcaaagcttgtcacgatgac
atcacagaccccaaaaggatcaaaaagtgtggctgcaaacgactgatttattccaagatg
tccgtctacaaacgaatgaaactggcatgttgttttgattgcggccgttcagagcgagac
tgctcttgcatgtcaggcagtgtacatagtaacatggacacccttcagagggcctaccca
ctttcctctgtctctgttcatgattgcgcaaccactttacgtgccttctcctcagctaaa
tataagtataatggatttgtcagatcaccagcagatggcgctacaacaccacggaacagt
ggaagccaaaaagaggctggcgttcgattcaaagctgattgcaatctagttgaggatgag
catccatcgactctctcacccaaaaaaaagcagcgcaatggggggatgcgaaactcgccc
aactgctcgcccaaaatgatgagtcgacatgatcccctcctaattcctggaaatgaacaa
attgagaacatggacatgaacgtcaagaggtacgactcgacgggaatgtttcactggtgc
ccttccaaagaaatcgagaaagtcatcctgactcggagcgaagcctccatgactgtgctg
agcggccatgtagtggtctgtatatttggggatgtcacgtccgctttggtggggctgcga
aacctggtgatgcctttaagagccagcaattttcactaccatgaactaaagcctatagtt
tttgtgggctcgctggattaccttcggagagagtgggagactttacacaacttccccaag
gtctccatcttacctggtacaccattaagtcgggcagatttaagggctgtcaacatcaac
ctctgtgacatgtgcgtaatactgtcagccaatcagaacaatatcgaagatgcctctctg
caggataaggaatgcatcttggcatcactcaacatcaagtctatgcagtttgatgacagc
attggggtcttacaggctaattcccaaggtttcacgcctcctggaatggacaggtcatct
ccagacagcagtccagtacatggctttgtgcgtcaggcttcggtaaccaccggatccaac
atccccatcatcacagagctagctaaacctggcaaactactgccattggtttctctcagt
caggaaaataaaagtggaaccagcatacaaatgataacagagctggtgaatgactcgaac
gttcagtttctggaccaagacgatgacgacgacccagacacggaactgtacctcactcag
cccttcgcctgcggcaccgcctttgccgtcagtgtactcgactccctgatgagtgcgaca
tacttcaatgataacatcctcacactaatccggacactagtcacgggaggagccacgcca
gagctggaggccctgctggctgaggagaacgctctcagaggaggctacagcacgccacag
acgctggccaacagagacaggtgtcgcgtcgcccagctggccctgtatgacggcccgttt
gctgacttaggggacggtggctgctacggcgacttgttctgtaaagccctgaaaacatac
aacatgctgtgttttgggatctacagattaagagatgctcatctcggcacaccaagccag
tgcacaaaacgatatgtgatcacaaaccccccgtacgagtttgagctggtgcccacagac
ctgatcttctgcctcatgcagtttgaccacaatgctggccagtcacggacaagcttatcc
cactcttcccactcctcccattcctccagcaaaaagagttcctctgtgcactcggtgcct
ccctccaaccggcagaaccgcagcagtaagagcagagaggcaagggaaaaacagaatgca
acaaggatgaatagaatgggccaagaaaagaaatggtttacagatgaaccggaaaatgcc
tacccaaggaacattcagatcaagcccatgagcactcacatggccaaccaagtcaaccaa
tacaaatccactagtagcctgattccaccaatcagagaagttgaagatgaatgctga
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