Xiphophorus hellerii (green swordtail): 116714084
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Entry
116714084 CDS
T07363
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116714084
Spliceosome [BR:
xhe03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116714084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
HrpB1_HrpK
TPR_11
TPR_16
TPR_12
HAT
GAT
TPR_21
Motif
Other DBs
NCBI-GeneID:
116714084
NCBI-ProteinID:
XP_032410285
LinkDB
All DBs
Position
23:14205582..14213030
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AA seq
723 aa
AA seq
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MAAESCEEMSGNGVPEESSAMDVTEALPPPPEASEENGGAAAAPEGPADPDNYSTALATA
SEQEDLPADFERLWKAAHDNPQDFPSWTDLLQYCEHEGHAAAYRRALEAFLVRYPLCYGY
WKKFVDLERRGGDNNIAEEVCIRGLQAIPLSVDLWIHYINLLLGTLDMNLPDSAVRIRSV
FENGVASCGLDFHSDRLWDLYVEWEKEHGNVKNAAAVLDRALRVPTQLYSTHYDKFKAHL
NNNPPKDVLPSEEYEELRATCRQSQKAKRAEQAQEADEERPPGEEEPATPEGTDSEELMQ
KIRDQVLLRRDKVYQDNEGEVRKRWNYEDAIKRPYFHVRPLDRLQLRAWHTYLDWEIAEL
NKDTKESSQDPNQESTEESEITTQRQEASDDAPAVQGDHRVRILFERCLIACALYEEFWT
RYIQYLEPQGVQETRAVYRRACQVHLPNKPNIHMQWATFEERHGDLNEARRVLEALEKAR
PGLAVVRIRRAALERRAGRLDQSEALLREAVAESKERPTLHAFYSIKLARLLLKVARNPD
GARTVLQEALEISPDNDKLHLNLLDLESSAEPGASAEAVQECVTRALAAPLTPQTKLLLS
QRGLQFTEECSNSIKSVLSVYEAHQKLLDELGGTKREAENGDEDPEKTSKTDDSSSSSAA
APASSTSHVPITTPPPPVMGADPSAQTGYGAYSSWYQQPQYGGYGGYGYQNAWNYNQSYY
PPS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagagctgtgaagagatgagcggtaacggggtgcccgaagagtcttcagcc
atggatgtcacagaggcactgccacctcctcctgaagcgtcggaggaaaatggcggtgca
gctgcggcccctgagggtcctgcagacccagataactactccacagccctggcaacagcg
agcgaacaggaggatctacctgcagactttgagcgtctgtggaaagccgcacatgacaat
cctcaggacttccccagctggaccgatctgctccagtactgtgagcatgagggtcatgct
gccgcgtaccgcagagcgctggaagcctttctggttcggtatcctctctgctacggctac
tggaaaaaatttgtcgacctggaacgtcgaggcggcgacaacaatatagcagaggaggtg
tgtattcgtggtcttcaagcaattcctctgagcgtagatctttggatccactacatcaat
ctgctgctgggaacgttggacatgaacctgcccgattcagctgttcggattcgcagtgtt
tttgagaatggcgttgcgtcgtgcggtttggatttccactcggaccgcctgtgggatctc
tacgtggagtgggagaaggagcacggaaacgtgaagaacgcagcggccgtcctggaccga
gcgctcagagttcccactcagctctacagcacccactacgacaagttcaaagcgcatctt
aacaacaacccgcctaaagacgtgctcccctctgaggagtacgaggagctgagggcgacg
tgccggcagagccagaaggcaaagcgggccgaacaggcccaggaggcggacgaggagagg
ccgccaggagaggaggagcccgctacacccgagggtaccgactcggaggagctgatgcag
aagataagagaccaggttctgcttcgtagagacaaagtttaccaggacaacgagggagaa
gtcaggaaaaggtggaactatgaagatgctatcaagcgtccatacttccacgtccggccg
ctggaccgcctccagctccgagcctggcacacctacctggactgggagatcgctgagctg
aacaaagacaccaaagagtcgtcacaagatccaaaccaggaatcgacggaggaatctgag
atcacaacgcagcgccaggaagcatcagatgatgctcccgccgtccagggcgaccacaga
gttcgcatcctgtttgagcgctgcctgatcgcctgcgctctgtacgaggagttctggacc
aggtacattcagtacctggagccgcagggtgtgcaggagacccgggccgtctacaggcga
gcctgccaggtccacctccccaacaagcccaacatccacatgcagtgggccacgtttgag
gagcgacacggtgacctcaacgaggcccggcgggttctggaggccctggagaaagcccgg
cctggtctggctgtggttcgcatccgcagggcggccttagagcgccgcgcgggccggctg
gaccagtcggaggctctgctgcgagaggcggtggctgaatccaaagagaggccgacgctg
cacgccttctactccatcaaactggcccgtctgctgctcaaagtggccagaaacccagac
ggcgcccgcacggttttacaggaagcgctggagattagtccggataacgacaagctgcac
ttgaacctgttggacctggagtcatctgcggagccgggggcttcggccgaggcggtgcag
gagtgtgtgactcgggccctggcggctccgctcaccccacaaaccaagttacttctgtca
cagagaggcctccagttcacagaggagtgcagcaactccattaagagcgtgctgtccgtc
tacgaggcgcatcagaagctgctggacgagctgggaggcacaaagagagaagcagagaac
ggggacgaggatccagagaaaactagcaaaacagacgacagctcttcttcttctgctgct
gcgccggcatccagcacgtcacatgttcccatcaccacgccgccgcctcctgtgatgggc
gccgacccgagcgcccagaccggatacggagcgtacagcagctggtaccagcaaccgcag
tacggcggctacggcggctacggctaccagaacgcctggaactacaaccagtcctactat
ccacccagttaa
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