Xiphophorus hellerii (green swordtail): 116714214 Help Entry 116714214         CDS       T07363                                  Symbol prpf19 Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism xhe  Xiphophorus hellerii (green swordtail) Pathway xhe03040   Spliceosome xhe04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:xhe00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     116714214 (prpf19)   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     116714214 (prpf19)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:xhe03041]     116714214 (prpf19)    04121 Ubiquitin system [BR:xhe04121]     116714214 (prpf19)    03400 DNA repair and recombination proteins [BR:xhe03400]     116714214 (prpf19) Enzymes [BR:xhe01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      116714214 (prpf19) Spliceosome [BR:xhe03041]  Complex B   Other components    Prp19 complex     116714214 (prpf19)  Complex C    Prp19-CDC5 complex     116714214 (prpf19) Ubiquitin system [BR:xhe04121]  Ubiquitin ligases (E3)   U-box type E3    116714214 (prpf19) DNA repair and recombination proteins [BR:xhe03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     116714214 (prpf19) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th PEP5_VPS11_N Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_SPT8 U-box Beta-prop_DCAF4 PROPPIN Beta-prop_Nup120_160 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Cytochrom_D1 zf-Nse RMC1_N B-prop_COPA_B_2nd Motif Other DBs NCBI-GeneID:  116714214 NCBI-ProteinID:  XP_032410513 LinkDB All DBs Position 23:complement(17780214..17786258) Genome browser AA seq 505 aa AA seqDB search MSLVCAICNEVPEHPCISPVSNHVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVTHP IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL NKEVTAAREALATLKPQAGLVAPQAVPASQPAAAGGGGEPMEISEQVGMTPEIIQKLQDK ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILSLDVCPSDTNKVLT GGADKNVVVFDKNEEQIVATLKGHAKKVTSVIYHPSQSVVFSASPDATIRVWSVTGGNCI QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW DLRKLKNFKTISLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT GVSFGENAKFLTSAGMDRSLRFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtctctggtttgtgcaatctgcaacgaggtaccggagcacccgtgcatctccccggtg tccaatcatgtgttcgagcgaaggctaatcgagaagtacatcgctgagaatgggacggac ccgatgaacggacagccgctgtccgaggagcagctggtggacatcaaagtgacccatcca atcagaccaaaggctccatcagctacaagcatccctgccattctcaagtcacttcaagat gagtgggatgctgtgatgctgcatagcttcactctgcggcagcagctgcagacgactcgt caggaactctcacatgccctgtatcagcacgacgcagcctgcagagtcatcgctcgactc aacaaagaggtcactgctgcaagagaagctcttgctacccttaaaccgcaagctggactg gtggctcctcaggctgtgccggcctcccagccagctgctgctggtggcggtggagagcca atggagatcagcgaacaggtgggaatgaccccagagatcatccagaagcttcaagacaaa gctactattctcaccacagagagaaagaagagaggaaaaacagtcccagaagagctggtc agagctgaagacctcagcaagtatcgccaagtggcctcgcatgctggccttcacagcgcc agcgttcctggtatcctgtccctggatgtgtgtccttcggacaccaacaaagtgctcact ggtggcgctgataagaatgtggttgtgttcgacaagaacgaagagcagattgtggcaact ctgaaaggtcatgccaaaaaggtcacctcggtcatttaccatccatcccagtccgtggtc ttctctgcctctcctgacgccaccatccgtgtgtggtccgttaccggcggcaactgcatt caggtggtgcgagcccacgaagctggagtcaccggactgtctctgcatgctacaggagac tacctgctcagctcctctgaggatcagtactgggccttttctgacatccaaactggtcga gtcctcaccaaagtcactgatgagagtgctggctgtgctctcacctgtgcccagttccac cctgatggtctcatttttggcaccggtacggccgactcccagatcaagatttgggatctg aaggagcgcaccaacgtggccaacttcccgggccactctggacccgtgacctccatcgct ttctctgagaacggatactacctggccacaggtgcccaggatagctctgtgaaactgtgg gatctgaggaaactgaagaactttaagactatatctctggacaacaactatgaggtgaag tctctggtctttgatcagagcgggacctacctggctgtaggcgggtctgacatccgtgtc tacatctgcaagcagtggtctgaggtgctcaacttcacagaccatactggtttggtgact ggagtttccttcggagaaaatgccaagttcctgacatctgcaggaatggacagaagtctc cgattttacagcttgtag

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