Xiphophorus hellerii (green swordtail): 116714325
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Entry
116714325 CDS
T07363
Name
(RefSeq) rab11 family-interacting protein 1-like isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116714325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116714325
Membrane trafficking [BR:
xhe04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
116714325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
End3
Motif
Other DBs
NCBI-GeneID:
116714325
NCBI-ProteinID:
XP_032410712
LinkDB
All DBs
Position
23:complement(11251584..11265059)
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AA seq
1443 aa
AA seq
DB search
MMSLIDLDDDQRWVPTHVNVTVLRARGLRTKGKHGSRYLYTIIQVGKEKYTTGLVEKAEV
PVWNEECCFELLPGILEEGGRSAFPPGSGDLVLTVMHRVLIGLDVFLGQTIIPLDKIFQD
GMCPRDEWFKLNSKAGRKEKERGELQVTVQFTRNNMTASMFDLTMKDKPRSAFGKLKDRV
TGRKRGDVESSSAIVPGRYAALSGSLGQPFGEEGGVGVKSKEVEITEEKRSKMKDFFKGR
LGKSSDTRSCSSLASESSLSSMASDNLGPPPSLDLLSDPPSSPIYTSKVRIDAHYGEADL
AKKVLTTQHTTKILTHKRAFSDEASKITTALPRSNVAVESLKGQTMTQSKSSLCINGSHV
YDSEPLTPKSSGALPSKLVLLEKCSPLSRSLQNLTKRGEEKSSFTEGRRWSFDKLKKEEK
EEEKEVLAQEAQTGDHPVQAAMPIVSSAGCSPEKGRKLRKTLFSAGRSDSLPSKSDLNQA
GASSEGRLRGWFGSGDSQNKPRLEVSTMVESSSDVPPSLSPCSPVPPPCSPPSASPSGHV
SPDNHSHINLFTPSSSPSSNPLSPSNPFLPCMQRNPFFEELVTEELEKLPSVAPCSLSDS
PPFHYTTLPADTNPEVSSKNRVSIKRERPRPVAKQISLPALVPKGTTPGSPVHSPPYSMF
EHPGEWEKSFDAFACSRLNSPKGRLPQEEPRTSPTLSCKRSFSPVENIGCNYVQELQRCN
DEPPPLPPRRLIRTSVNEIFSDGWLHRGQELAVHKEAYLLSQTGVASLQHGREGESKKEI
PSPNTSSSSGTSESVGVHTQPYTNNTSFGLISEENSKRFKYEPLEDVADCWGGTLFEQDL
YRRACRGNYGQQRLNSHHLSMSTEENAGDKISFKNSGSEGLVDSDHFSILSSVPPDVPNI
SYTTAEETEEPNPCESTCLNNNISFSLTLGDLNMNVSNSDFGFIDSDGSSQSEAADNFKS
NLGENVLPQDSQLDIYQKETTSGDIFTLKDTYITTLNSSFEVTASSKKLCKVSPVCQDKC
HDCLCEPPNKTLCGPCVSKSQGIVALLQQNSASNSPDVEAEHKGEQMRCDDDFEKIKKDC
DDNGNPEDNLDKLKQTESFSGVVSARIRPKGVSRQNSSDSPSSQSKYGDREFVQFLSLVQ
NISEVSEGPLSYQPTKSVLSSLQVLEHPNKSKLTSVSDQTQQFMSNTLSPIPSLDKEKTT
PISFEDLHAKVAPYCRTPSNTKIRKSLQEHEPCSPSIPSTLPLSADTLVCCPPIQASSTG
PIAKVGTLLAMASSTPSLSATFTTDQPLTDARHSLLPEETQPAGSLPLQESRSHPVKPLT
SSQPEKKEGRSVLEKLKSTINPGRSTHQATPEPEKSPEVTTDRVAQYQSLTNMELISLLL
QQEMDMEKQQAASDQQGAQLQKVEAELKKVKAQVRDLEDYIDNLLLRIMEQTPTLLQVRS
RHK
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccttgatagatctggacgatgatcagcggtgggtgcctactcatgttaatgtc
accgtgctccgcgccagggggctgcgaaccaagggcaagcacggcagccgctacctctac
accatcatccaggtggggaaggagaagtacaccaccgggctggtggagaaggcggaggtg
cccgtgtggaacgaggagtgctgcttcgagctgctccccgggatcctggaggagggcggc
cgcagcgcgttccccccggggagcggagacctggttctcaccgtcatgcaccgggtcctc
atcgggctggacgtgtttctgggtcaaactatcatccctctggataagatattccaggac
ggaatgtgtcccagagatgaatggttcaaactgaactccaaggcgggtagaaaagagaag
gagcgtggtgaacttcaggtgacggtccagttcacccgcaacaacatgaccgccagcatg
ttcgacctcaccatgaaggacaagccccggtctgcatttggcaagctcaaggatcgggtc
actgggaggaaaaggggtgatgtggagtcttcctcagccattgtgccgggccgctacgct
gcgttgtcagggtccctggggcaaccgtttggagaggagggaggggttggggtgaagtca
aaagaggtggagataacagaggagaagaggagcaagatgaaagacttcttcaagggaaga
ctgggaaagtcatctgacacgaggtcgtgctcatctctggcctcagagagcagcttgtct
tccatggccagtgataaccttggccctccgcccagcctggatctgctgtcagaccccccc
agctcccccatttacacaagcaaagtgagaattgatgcacactatggagaagcagaccta
gcaaaaaaagtgctcaccacccagcacaccaccaagattcttacgcacaagcgagccttc
agcgatgaagctagtaagatcaccacagccctccctcgatcaaatgtcgcagtggagtct
ctcaagggtcagaccatgactcagtccaagtcatctctctgtataaatggaagccatgtc
tacgattcagagccattgactccaaaaagctctggagcactcccgtccaaactggttctg
ctggagaaatgttcaccactgtctcggtctctgcagaatctcacaaaaagaggagaggag
aaaagttcctttaccgagggacggcgctggtcctttgataagctgaagaaagaggaaaag
gaggaagagaaagaagtattagctcaagaggctcagactggagatcaccctgttcaggca
gcaatgccaattgtatcttcagcaggttgttcacctgaaaaaggaaggaaactgagaaag
acgttgttctctgcagggaggagcgattctctgccttctaagtcagacctaaaccaggct
ggtgcttcatcggagggaaggctcagaggctggtttggctctggagactcccagaacaag
ccaaggctggaagtttctactatggtagaaagcagctcagatgtacccccttccctctct
ccttgctccccagtacctcctccatgctcccctccctctgcttctccctctggtcatgtt
tcacctgacaatcacagtcacatcaacctcttcaccccttcctcttctccttcctcaaac
cctctctccccttccaacccttttctgccatgtatgcagcgcaaccccttttttgaagag
cttgtgacagaagagttagagaagttgccttctgttgcaccatgctccttatcagactca
cccccctttcattacaccactctgccagcagacaccaatcctgaagtcagcagtaaaaat
agggtttcaataaaacgtgagcgcccccggccagttgctaagcagatatcactacctgct
ttagtgcccaaaggaaccacgcctggctcccctgtccactcccctccttactccatgttt
gagcatccaggcgaatgggagaaatcctttgatgcctttgcatgtagtagactcaactcc
cctaaaggtagacttcctcaagaagagcccagaaccagtccaaccttatcttgtaaacgt
agcttttctccagtggaaaacattggctgtaactacgtacaagaactgcaaagatgcaat
gacgagcctccacctttacctccaaggagacttataaggacttcggtgaatgaaattttc
tcagatggctggctgcacagaggccaggaattagctgtccataaagaagcctatctcctc
tctcagactggtgtggcatctttgcagcatggcagggagggtgaatccaaaaaagagatc
ccttctcccaacacaagttcaagcagcggaacatcagagtctgtaggcgtccacacccaa
ccatatacaaacaacacctcatttggacttatatctgaagagaactccaaaaggttcaaa
tatgaacctttggaagatgtagctgactgttggggtggaacattgtttgagcaagacttg
tacagacgtgcatgcaggggaaattatggacaacaaagactgaacagtcatcatttatca
atgagcactgaggaaaatgcaggagataaaatctcattcaagaactcagggtctgaaggg
cttgttgatagtgaccatttcagcatactgtccagtgttccccctgatgtaccaaatata
tcatatactacagcagaggagacagaagaacctaacccatgtgaatccacatgcctcaac
aataacatatctttttcactaacactaggagaccttaacatgaatgtgagcaattcagat
tttggtttcattgactcagatggatcttctcaatctgaagcagccgataatttcaaaagc
aatctaggagaaaacgttctaccccaagattcacaattagacatttaccagaaggagacc
acatctggggacatattcacattaaaggacacctatataaccactttgaactcttctttt
gaagtaactgcatcttctaaaaaactttgcaaagtatcaccagtttgccaagacaagtgc
catgactgtctatgcgaaccaccaaataaaacattgtgtggtccctgtgtgtcaaagagc
caagggattgttgctctattgcaacaaaattctgcatctaactcaccagatgttgaagct
gaacataaaggtgaacaaatgagatgtgatgatgactttgaaaagataaagaaagactgt
gatgataatgggaacccagaagacaacttggacaaacttaagcagaccgagtcattttca
ggagttgttagtgcacgaatcagaccaaaaggagtttctagacagaacagcagtgacagc
ccaagcagccaaagcaaatatggagacagggagtttgtgcagtttctatccctcgtccag
aacatttcagaagtcagtgaaggaccattgtcttatcaaccaactaaatccgtcctgtct
tccttacaagttcttgaacaccccaacaagtctaaattgacctctgtcagtgaccaaaca
caacaatttatgtctaacacattgtccccaataccttcattggacaaagaaaaaacgact
ccaatcagctttgaagatcttcatgcaaaagttgcaccatactgcagaaccccttccaat
acaaagattaggaaatctttgcaagaacatgaaccctgttctccctccatcccttctaca
ctccccctgtcagctgacaccctggtctgttgcccccccatacaagcctcaagcacaggg
cctattgctaaagtcggcactttgctggctatggcctcttccaccccctcgctgtctgcc
accttcaccactgaccagcccctgactgatgcacggcactcacttttacctgaggagaca
cagcctgctggcagcctgccccttcaggagagcaggtctcatccagtgaaaccattgaca
tccagccagcctgagaagaaagagggtcgctcagttcttgagaagctaaaatctaccata
aatccaggacgatccacccatcaggccacacctgaacctgagaagagtccggaggttacc
acagacagagtggctcaatatcagagccttaccaacatggaactgatctccctgctactg
cagcaggagatggacatggagaagcagcaggcagcatctgaccagcagggggcgcagctg
cagaaggttgaggcagagctgaagaaagtgaaggcgcaggttcgagacctggaggactac
attgataatctgttactgcggatcatggagcagactcccacactgcttcaagtacgctca
aggcacaagtaa
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