Xiphophorus hellerii (green swordtail): 116714355
Help
Entry
116714355 CDS
T07363
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
116714355
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xhe01009
]
116714355
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xhe04515
]
116714355
Protein phosphatases and associated proteins [BR:
xhe01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116714355
Cell adhesion molecules [BR:
xhe04515
]
Cadherins
Protocadherins
116714355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
DDE_3
DUF6249
Motif
Other DBs
NCBI-GeneID:
116714355
NCBI-ProteinID:
XP_032410762
LinkDB
All DBs
Position
23:15103975..15267612
Genome browser
AA seq
1319 aa
AA seq
DB search
MNLASQVHVLVALLTCLVLLCKAQERDYIVKEEQQENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEASTGEIFTTNHRIDREKLCSGIFTEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFRDSELEVSVPENAPMGTSVAQLHATDADLGSNAQVHFSFSNQISSSTKRHF
AINSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEFQLSIPENND
PLMQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSAPLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDTDAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTSPGSVVTRVFAIDNDTGMNAELQYSIISNII
ITSRVSPRGLFSIDKTTGNITLQEKIVLADQGLHRLVVKVKDLGQPESLHAIALVHLFVN
DTVSNSTFIQEQLRKSMETPLDRNIGDNEITPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPEDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECGCQGGFKAAGQIATRQNPGQ
TPEKTFNSPPPICPHKSPDLNPVEHLWDVVEREICIRDVQSRNLPQLCDEACQLGKITSV
NLDSVVRNMRNLSSNLDFSDNYLLQTQRRVTFHLPDGSQESCSDSGLGDAEPSSTASATQ
PLPLSFPQEEYYEQASPNSRTEGDGNSDPESTIEVNLKKALAEASETCTQECLILGHSDS
CWMPPTLAQFQSPGSNSPTSTPTTTTITAALPSFGFQGVKANIGGMGVMDGRHTLGRSVP
KRDELDKGFNRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQHTPTGGSSSFLHEHQL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcaggtgcatgttctggtggccttgctcacctgtttggtcttatta
tgcaaggcccaggagagggactatatcgtgaaggaggagcagcaggagaacgttcgcatc
gggaatctgcgcaaggacctcgaccttaacctggaccccaacatcagactgtcctctccg
ctgcagttcaagcctgtgtataagacgggcgacgtgcctttggtgagggtcgaggccagc
acaggggagattttcaccaccaaccacaggattgaccgggagaagctgtgctcggggatc
ttcacggagaaacgctgctactatgagatcgaggtggcggtgctgcccgacgagatcttt
cgattggttaagatccggttcctgattgaggatgtgaatgacaatgcacccctcttccag
tccactgtaataaacatctccatccctgaaaacacagccatcaacacccgatacccagtg
ccatcagcatttgaccctgatgtgggaattaatgggatccaacactatgagctggtcaag
agtgtcaatgagtttggcttagacatcattgagacccctgaaggtgacaagtggccacaa
ctcattgttcagcagaatcttgatcgggagcaaaaggacacctttgtgatgaagatcaag
gtagaagatggtggcaacccccctaaatctagcactgccattctccaggttaccatttct
gatgtcaacgacaatcgtcctatcttcagggacagtgagttggaagtctctgttccagaa
aatgctccgatggggacttctgtggctcagcttcacgccacagatgcagacctgggttcc
aatgcacaagtccatttttcattcagcaaccagatctcctcctcaacaaagcgtcatttt
gccatcaatagctctactggactgattactgtaaagcaacctctagaccgggaggttact
cctgttcataaactcattgttctcgcaagtgatggcagctcaaccccatcaagagccaca
gtgattgtcaatgtcacagatgttaatgacaatgttccttccatagacactcgttacatt
atcaacctggtaaatgggactgttctactgtctgagaatgctcctctcaacaccaaaata
gcccttattactgttactgacaaggatgccgatctgtatggcaaagtggcttgctacact
gaccatgatgttcctttccggcttaagcctgtctttaatgatcagttcttactggagaca
gctgcccctctagattatgaaaccactcgtgaatatgctattaagatagtggcctcggac
agaggaacgcctcctttgaacacttctgctatggtcttaattaaaatcaaggatgagaat
gacaatgcacccattttccctcagcctgaatttcaactgtcaataccagagaacaatgac
cccttaatgcagttaataaaaatcagtgccactgatgcagatagcggacacaatgctgag
attatttatactcttggccctgatgcaccggatgggtttaacatagacaggcgatcagga
attctctctgttgggaaacgactggacagagagaagcaagagaggtactcattcactgtc
atagcaagagacaatggctcagcacccttacagagtaatgtcactgttaggttaattgtt
caggacctcaatgacaacagcccagctttcactcaccctgagtacaacttctatgtgcct
gagaacctgccgctttatgggacagtgggcttgatcacagtgacagatacagatgctgga
gataatgctgttatcaccttgtctattttgaacggcaaagacaatttcatcattgaccct
caaactggtgtgatcaaaccaaatatcacctttgacagggagcagcaaagctcatatacc
ttcatggtcaaagcagttgatggaggacagcctccaagttcctcctatgccaaggtcaca
attaatgttgtcgatgtgaatgacaatcgccctgtgtttgttatcccttcctccaattat
tcatatgacctggtacgaaccaccacctccccaggttctgtggtgaccagagtgtttgcc
attgacaatgacacaggtatgaacgctgagttgcagtacagtatcatcagcaacatcatc
atcacatctagggtctcccctcgaggtctcttttccatcgacaaaacaacgggtaacata
acgctgcaggagaaaattgtactagctgatcagggactgcatagactggtggtcaaggtc
aaagatttaggccaacctgagtcattacatgctattgcacttgtacacttgtttgtcaat
gacactgtgtcaaattctacctttatccaagagcagctacgaaaaagtatggaaacacca
ttggatcgtaatataggggacaatgagataacgcctcaagccaatggatatgtaattgtt
gttatagcgatcatagcaggaaccatgactgttattttggtgatatttgtcaccgccttg
gtgcgctgccggcagacacctagacataaagtagtacagaaaggcaagcagagtggggag
tgggtgtcacccaaccaagagaaccgtcaaatcaagaagaagaagaagagaaagaagcga
tctcctaagagccttctcctaaactttgtgaccatagatgaatccaagcctgaagacccc
acccatgagcatgttaatggcaccctggatcttcctgtagagcttgaggagcagaccatg
ggaaagtacaattgggcgaccacgcctacaaccttcaaacctgacagcccagacttagcc
aagcattataaatctgcatcccctcagcccacatttcaaatcaaaccagaaactcctgtg
gcccctaagaaacatcacgtgatccaggagctccccttggacaatacttttgtggtgggc
tgcgactcactctccaagtgttcatcgactagctccgacccatacagtgtctcagagtgc
ggctgtcaggggggattcaaggctgcagggcaaatcgccacccggcagaaccccggccag
acaccagagaagacttttaactctccaccacccatttgtcctcataagtcgccagatctc
aatccagtagagcacctctgggatgtggtggaacgggagatttgcatcagggatgtacag
tcaagaaatctgcctcaactgtgtgatgaggcctgtcaacttggcaagataacctctgtg
aatcttgactctgtggtgagaaatatgagaaatctttcttcaaacctggatttttcagac
aactatctactgcagacccaacgtcgtgtgaccttccatcttccggatggttcccaggaa
agttgcagtgacagtgggcttggggacgcagagcccagcagcacagccagtgccacccag
cctctccctctaagcttcccccaagaggagtactatgagcaagcgtcacctaatagtcgc
accgagggagacggaaattcagatcctgaatctaccattgaagtaaatttgaagaaagct
ctggctgaggcatctgagacctgcacccaggagtgtctaatactgggccactctgacagc
tgctggatgcccccgaccctggcccagttccagagccctggcagcaacagccccacctct
acccctaccaccaccaccatcactgctgcgctcccctcctttggcttccagggagtaaaa
gctaacataggtggcatgggggtcatggatggccggcacactctgggtagatctgtgccc
aaaagagatgaattggacaaagggttcaaccgaccacagttctacaacaccctggataga
cactgcagcagtaagaaggaagacccagtgaaggtcattccactggcaagcttctcctcg
cctgggcagcacactcctactggtggcagcagctctttcctacatgagcaccagctgtaa
DBGET
integrated database retrieval system
