Xiphophorus hellerii (green swordtail): 116714438
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Entry
116714438 CDS
T07363
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCHC domain-containing protein 7-like
KO
K12597
protein AIR1/2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116714438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116714438
03016 Transfer RNA biogenesis [BR:
xhe03016
]
116714438
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116714438
Transfer RNA biogenesis [BR:
xhe03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116714438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_2
Dmrt1
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
116714438
NCBI-ProteinID:
XP_032410916
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Position
23:complement(15607260..15613565)
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AA seq
487 aa
AA seq
DB search
MNSVNKNEVSDGKGNDKDHIFFIEDSITSESGEETCSGYMKHEKSAKLFSQLSRDSSPPL
LLAFSITSGKTQQDTSSVSSAGSQEQLEEDSDQPIEEWMILDGEEQAEDPSIQLNLGCWE
SSEEDVEDEGMTDKEVKSGGDTWAVSDKDKYGGTQSLGSRYFMAGRSSLCNICNRMGHVA
RSCYFHKQKSPTCVLCGVQGHVQRDCPSRPCSICGLPSHGLNPCRVPPVWKQHCHRCGVT
GHLFDACPDLWRQYHLTVKLGVPFRPRNACSLKHKSHHANCYNCSKRGHFGHECTKRRMI
SGTFPSLPYVSYYDTLDDILQQNAPMLTPAKELVSAGPLTSQQECCKDTPLVQGRSRTKL
EPGAHPGRRKTWPERRKERREVKRLRREAQAKREGGFLGRHFCTIVDAVCPADPYKSILR
SHRESKTSQENKKREEKTGKKSRKSREAEKWRKRGGIKRGDLHPHGDIDIGSEILLSPKQ
RVRHRRR
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaactctgtcaataaaaatgaagtatcggatggtaaaggaaatgacaaagaccacatt
ttcttcattgaggactccatcacttcagagagtggagaagagacgtgttctggttacatg
aaacatgagaaaagcgccaagctgttttcacagctcagcagagacagctctcctccgctg
ctccttgctttctccatcacctctggaaagactcagcaggacaccagcagtgtctccagt
gctggttcacaggagcagctggaagaggacagcgatcagcctattgaggagtggatgatc
ctggatggagaggagcaggcggaggacccaagcatccagctcaacctcggctgctgggag
agctctgaggaggatgttgaagatgaaggtatgacagacaaggaagtgaaatcaggaggg
gatacttgggctgtctcagacaaagacaagtatggaggcactcagtctctgggcagtcgc
tatttcatggctggtcgttcatccctctgtaacatctgcaacaggatgggacacgttgcc
agaagttgctactttcacaagcagaaaagtcccacttgtgtcctttgtggcgtccagggc
cacgtccaaagagactgtccgagccggccctgttccatttgtgggctgccttcgcatggc
ctcaacccctgcagagtgcctccagtgtggaagcagcactgccatcgctgcggcgtgacc
ggccacttgtttgatgcctgcccagatttatggcgacaataccacctgactgtcaagtta
ggggttcctttcagacccagaaacgcctgcagtctcaaacataagagccaccatgctaat
tgctacaactgctcaaaaaggggacactttggtcatgagtgcacaaagaggaggatgatt
agtggcacttttccctcactgccttatgtttcttattatgacactctggatgacattctc
cagcagaatgccccgatgctcacaccagccaaagaacttgtgagtgctggacccctaact
tcacagcaggaatgttgcaaagatacgccattggtgcagggaagaagcaggacaaagctg
gagcctggcgctcatcctggaaggaggaagacctggcctgaaaggcgcaaagagaggcgt
gaagtgaagcgactgaggagggaggcccaggctaagcgggaaggaggatttctggggagg
catttttgcaccattgttgatgcagtttgtcccgctgacccctataaatccatcctacgc
agtcatagagagtccaaaacctctcaggagaacaaaaagagagaggagaaaactggaaag
aagagcaggaagagcagagaggcagagaagtggagaaaaagaggggggataaaacgcggg
gatttgcatccacacggtgacattgacattggaagtgaaatccttctgtctccaaagcag
agagtacgtcaccgaaggagatga
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