Xiphophorus hellerii (green swordtail): 116714482
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Entry
116714482 CDS
T07363
Symbol
cstf2
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116714482 (cstf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116714482 (cstf2)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116714482 (cstf2)
U7-dependent histone pre-mRNA processing factors
116714482 (cstf2)
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GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
RRM_10
RRM_Rrp7
Motif
Other DBs
NCBI-GeneID:
116714482
NCBI-ProteinID:
XP_032410983
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Position
23:complement(8556996..8570792)
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AA seq
549 aa
AA seq
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MANVAAATVAAAAAAAAANRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRL
VYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG
TPIIESPFGDSVSPEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQ
LAYALLQAQVVMRIVDPEIALKMLHRQTAVQPLVSSSQGGGAPPVNPPVQPNVQVSQPQP
VPVMHVNGAPQMMQPSNMGVPNMPGPGPAPGPGPIGPPGNLQNSPTGSAGPAALERPQGP
GGIPPRGLLGDGPNDPRGGTLLSVTGEVIDPNRGYMAAPPPHQAPPVHIPQMGGGPQMGG
GPQMGGGPQMGGGPQMGGGPQMGGGPQMGGGPQMGGGPQMGGGPPEMRGPPMPEPRTMMV
DPRGPPMMEPRGPPMEPRGRDPRAMDARGPVAGQRVPMVPGMQGPVPHAMGPNVPPPARP
GPGISGVPPSGGGFSPGQNQVSTQDQEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQ
IQKTASGAP
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgttgctgcagctaccgtggccgctgctgccgcagctgccgccgcgaacaga
gacccagccgtggataggtcactacgatccgttttcgttggaaacattccatatgaagcc
acagaagagcagttgaaagacatattctccgaagttggacttgttgtcagcttcaggtta
gtgtatgacagagagacaggaaagccaaaaggatatggcttctgtgaataccaggaccag
gaaacggccctcagcgccatgaggaacctgaatgggagagagttcagtggtcgggctctc
agagtcgacaatgcagctagtgaaaaaaataaagaagagctcaaaagtctggggaccgga
acccccatcatcgagtctccttttggagacagtgtgtcgccagaggaggctccagagtcc
atcagcagagctgtggcgagtcttccacctgagcagatgtttgagttgatgaaacaaatg
aagctgtgtgtacaaaacagcccccaggaggcgaggaacatgctgctgcagaacccgcag
ctggcctacgctctgctgcaggcgcaggtcgtgatgcggatcgttgacccggagatcgct
ttgaaaatgttgcatcgtcaaacagctgttcagcccctggtgtccagcagtcagggtgga
ggagcaccgcctgtcaatcctcctgttcagcccaatgtgcaggtgtctcaaccacaacct
gtgccggtcatgcatgtgaatggagcccctcagatgatgcagccctccaacatgggcgtc
cccaacatgcctggaccgggccctgcaccaggacccggaccaatcggacctccaggaaac
ctacagaattcccccacaggatcagccggacctgccgctctcgagcggcctcaaggaccg
ggcggtatcccacccagaggcctgttgggcgacggacccaatgaccccagaggaggaact
ctgctgtctgtcactggagaggtcatcgaccccaaccggggctacatggccgctccgccg
cctcaccaggctccgcccgtacatatacctcagatgggaggcgggccacagatgggaggc
ggaccacagatgggaggcggacctcagatgggtggcggacctcagatgggaggcggacct
cagatgggaggcggacctcagatgggaggcggaccacagatgggaggcggaccacagatg
ggaggcgggccgcccgaaatgagaggccctccgatgcctgagccgcggaccatgatggtg
gacccgcgagggcctccgatgatggagccgcggggaccgccgatggaacccagaggccgt
gacccaagggcgatggacgctcgcgggccagtggcgggtcagagggttcccatggtgccc
gggatgcagggcccggtcccccacgccatgggtccaaacgttcctccgcctgcaagaccg
ggtccgggtatttctggcgtcccgccttcaggaggaggcttcagtcccggccagaatcag
gtctccactcaggatcaggagaaggccgccctcatcatgcaggtgctgcagctgacccca
gagcagatcgccatgctgccgccggagcagcggcagagcatcctcatcctcaaggagcag
attcagaaaaccgcctccggcgctccgtga
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