Xiphophorus hellerii (green swordtail): 116714547
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Entry
116714547 CDS
T07363
Name
(RefSeq) transcription factor Sox-3
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116714547
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116714547
BRITE hierarchy
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
116714547
NCBI-ProteinID:
XP_032411070
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Position
23:7398548..7400420
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AA seq
300 aa
AA seq
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MYNMMETEIKTPLPQSNSGSAPGAKNNSASDQERVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYS
LPGGLLAPGSNAVNNSVSVGQRMDGYAHMNGWTNSAYSLMQDQLAYPQHHSMNSPQIQQM
HRYEMAGLQYPMMSSAQTYMNAASTYSMSPAYTQQTTSAMGLSSMASVCKTEPSSPPPAI
TSHSQRACLGDLRDMISMYLPPGGDSAEHSSLQSSRLHSVHPHYQTAGTGVNGTLPLTHI
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaaccgagatcaagaccccgctcccgcagtccaactcgggctcg
gcgccgggcgcaaagaacaacagcgccagcgaccaggagcgggtgaagcggccgatgaac
gccttcatggtatggtccaggggccagcggaggaagatggctcaagaaaaccccaaaatg
cacaactctgaaataagcaagcggctcggtgctgactggaaacttctgaccgacgccgag
aaaaggccgttcattgacgaggccaagcgtctacgggcgatgcacatgaaggagcacccg
gattataaataccggccccgcaggaagaccaagaccttgctcaagaaagacaagtattct
ctgcctgggggactgctggcgccaggatccaacgccgtcaacaactcggtgtcggtgggc
cagaggatggacggttacgcgcacatgaacggctggacaaacagcgcgtactccctgatg
caggaccagctggcctaccctcaacatcacagcatgaacagcccgcagatccagcagatg
caccggtacgagatggccggccttcagtacccgatgatgtcctcggcgcagacctacatg
aacgcggcgtccacctacagcatgtccccggcgtacacgcaacagaccaccagcgccatg
gggctgagctccatggcgtccgtgtgtaagacggagccgagctcgccgccgccggccatc
acgtcccactctcagcgggcgtgcttgggggacctgagggacatgatcagcatgtacctg
ccccccggcggggacagcgcggagcattcctccctgcagagcagccggttacacagcgtc
catccacactatcagaccgcagggactggcgtcaacgggacgctacctctcacccacatc
tga
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