Xiphophorus hellerii (green swordtail): 116714580
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Entry
116714580 CDS
T07363
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03020
RNA polymerase
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116714580 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
116714580 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116714580 (polr2b)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116714580 (polr2b)
Enzymes [BR:
xhe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116714580 (polr2b)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116714580 (polr2b)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116714580 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
116714580
NCBI-ProteinID:
XP_032411119
LinkDB
All DBs
Position
23:complement(656784..663945)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcaatacgatgaagatgatgatgaaatcactcctgat
ctgtggcaggaagcctgttggatcgtcatcagctcttattttgacgagaagggcctggtg
cggcagcagctggactcgttcgatgagttcatccagatgtcggtccagcggatcgtggag
gacgctccgcccatcgacctgcaggccgaggcgcagcacacctcaggggaggtggaggag
ccgccgcgctacctgctgaagttcgagcagatctacctgtccaagccgacccactgggag
cgggacggcgctccgtcccccatgatgcccaacgaggcccggctccggaacctgacgtac
tcggcgccgctgtacgtcgacatcactaagacgatcatcaaggagggggaggagcagctg
cagacgcagcatcagaagacattcatcggtaaaattcccataatgctccgctccacctac
tgcctgctcagcggcctgaccgaccgcgacctgtgcgagctcaacgagtgtccgctggac
ccgggcggctacttcatcatcaacggctccgagaaggtgctgatcgcgcaggagaaaatg
gccaccaacacggtctacgtcttcgccaagaaggactccaagtacgcgtacacgggcgag
tgccggtcctgcctggagaactcgtcccggcccaccagcaccatctgggtcagcatgatg
gcccgtggaggacagggggtgaagaagagcgccatcgggcagcgcatcgtgtccacgctg
ccgtacatcagacaggaagtgcccatcatcatcgtgttccgggcgctgggcttcgtgtcc
gacagagacatcctggagcacatcatctacgacttcgacgacccggagatgatggagatg
gtgaagccgtcgctggacgaggcgtttgtgatccaggagcagaacgtggcgctgaacttc
atcgggtccagaggcgccaagcccggcgtgacaaaggagcggcgcatcaagtacgccaag
gaagttctgcagaaggagatgctgccgcacgtcggcgtcagcgacttctgcgagaccaag
aaggcctacttcctggggtacatggtccaccggctgctcctcgcggctctgggccggcgg
gagctggacgacagggatcactatggcaacaagaggctggacctggccggaccgctgctg
gccttcctgttcagagggatgttcaagaacctcctgaaggagatccggatctacgcccag
aagttcatcgaccgagggaaggacttcaacctggagctggccatcaagactcggatcatc
tccgacggactcaagtactccctggccaccggcaactggggcgacgtcaagaaggcccac
caggcccgcgccggcgtgtcccaggtgttgaaccggctcaccttcgcctccacgctgtcc
cacctgcgccgggtcaactcccccatcggccgcgacggcaagctggccaaaccgaggcag
ctgcacaacacgctgtggggcatggtgtgccccgccgagacgcccgagggccacgccgtg
ggtctggtgaagaacctggccctcatggcctacatctcggtcggctctcagccgtctccc
atcctggagttcctggaggagtggagcatggagaacctggaggagatttccccggctgcc
attgccgacgctacgaagatcttcgtgaacggctgctgggtggggatccacaaagacccg
gagcagctgatgaacacgctgaggaagctccgcaggcagatggacatcatcgtgtcagag
gtgtcgatgatccgagacatccgggagcgggagatccggatctacacggacgccgggcgg
atctgccgaccgctgctgatcgtggagaagcagaagctgctgctgaagagacggcacatc
gaccagctgaaggagcgagagtacaacaactacagctggcaggacctggtggcgagcggc
gtggtggagtacatcgacacactggaggaggaaaccgtcatgctcgccatgacccctgat
gacctccaggagaagggcgtggcctactgctccacctacacccactgtgagatccacccg
tccatgatcctgggagtctgcgcctccatcatcccgttccccgaccacaaccagtctccc
aggaacacgtaccagtccgccatggggaagcaggccatgggcgtctacatcaccaacttc
cacgtgaggatggacacgctggcccacgtgctgtactacccccagaagccgctggtcacc
acgcgctccatggagtacctgcgcttccgggagctgccagcaggaatcaactccatcgtc
gccatcgcctcctacacaggctacaaccaggaggactcggtcatcatgaaccgctcggct
gtggaccgcggcttcttcaggtccgttttctaccggtcctacaaggagcaggagtccaag
aagggcttcgaccaggaggaaatcttcgagaagccgacccgcgagacgtgtcagggaatg
aggcacgccatctacgacaagctggacgacgacgggctgatcgcgcccggcgtccgcgtg
tccggggaggacgtgatcatcgggaagacggtgacgctgccggagaacgaggacgagttg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctgcggaccagcgag
accggcatcgtggaccaggtcatggtgacgctcaaccaggagggatacaagttctgcaag
atccgggtccgttcggtccggatccctcagatcggagacaagttcgccagccgccacggg
cagaagggaacctgcgggatccagtaccgacaggaggacatgccgttcacctgtgaaggc
atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgactgtcggccat
cttatcgagtgtctgcaggggaaggtgtcggccaacaaaggtgagatcggcgacgccacg
ccgttcaacgacgccgtcaacgtgcagaaagtgtccaacctgctgtccgagtacgggtac
cacctgagaggaaacgaggttctgtacaacggcttcacggggaggaagctgacgtcccag
atcttcatcgggccgacctactaccagcggctgaagcacatggtggacgataagatccac
tcccgggcccgcgggccggtccagatcctgaaccgccagccgatggagggccgctcccgt
gacggcgggctgcgtttcggggagatggagcgggactgccagatcgcccacggcgccgcc
cagttcctccgggagcgtctgttcgaggcgtccgacccgtaccaggtccacgtctgcaac
ctgtgcggcctgatggctatcgccaacaccaggacacacacctacgagtgtcggggctgc
cgcaacaagacgcagatctctctggtccggatgccgtacgcctgcaagctgctgttccag
gaactgatgtccatgagcatcgctcctcgaatgatgacctcatag
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integrated database retrieval system
