Xiphophorus hellerii (green swordtail): 116714586
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Entry
116714586 CDS
T07363
Symbol
nfkb1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04010
MAPK signaling pathway
xhe04210
Apoptosis
xhe04218
Cellular senescence
xhe04620
Toll-like receptor signaling pathway
xhe04621
NOD-like receptor signaling pathway
xhe04622
RIG-I-like receptor signaling pathway
xhe04623
Cytosolic DNA-sensing pathway
xhe04625
C-type lectin receptor signaling pathway
xhe04920
Adipocytokine signaling pathway
xhe05132
Salmonella infection
xhe05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
116714586 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
116714586 (nfkb1)
04218 Cellular senescence
116714586 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
116714586 (nfkb1)
04621 NOD-like receptor signaling pathway
116714586 (nfkb1)
04622 RIG-I-like receptor signaling pathway
116714586 (nfkb1)
04623 Cytosolic DNA-sensing pathway
116714586 (nfkb1)
04625 C-type lectin receptor signaling pathway
116714586 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
116714586 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
116714586 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
116714586 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116714586 (nfkb1)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
116714586 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_5
Ank_3
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
116714586
NCBI-ProteinID:
XP_032411143
LinkDB
All DBs
Position
23:complement(680596..705822)
Genome browser
AA seq
955 aa
AA seq
DB search
MAADENYMHASSQMFDTMMDPSFLEYSHFVPMPQMTALQSVDGPFLQILEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTQLPQLHAHSLVGKQ
CDKGICIADLQSKDSTISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVAIHPEIDA
LQGEVRVPRELSDHQRSMIISAAAAQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGLYRGGGGGGGPASGVGGPGSAGGGYYQGFSSYS
YGGAGGGFSSAYSAGLGGGGGTKHALQSEAADDSGDDSDPDNDPASGAVLRGSAQSDGSD
VDPDEALMETTCRQLDALFRYSVTGDSAYLLAPQRPLMAHRTTTETLGCIWRCCTASRRL
TSLTQVVSTLTGEELLNMRNHLYQTPLHLAVITRQKQAAEVLLLAGADPTLTDRHGNTVL
HLAAQQEGDGMVELLLRRREMRELLQFSNTAGLCAIHLAVLANRLTALRELLVGGADVEA
QERSGGRTALHLATETDNVSLAGCLLLEGNAKVDSCTFNGSTPLHVAAGRGSVKLTALLM
AAGADPHRENFEPIFIRDEEEEDEEEDEDDEGYISGTTPVNMAACPEVLDLLNGQEYEPR
SQRAFVPPQGDLSVLDVQVKRAVCGALEAEGCWENLAHHLGLGILNTAFRLSPNPARTLL
ESYEVSGGTVSDLLAALRSAGGCRALSILEGALRQNPDTAEEVQNPLVQNLKRTLGTTAA
SATAGWSSPRCSALIGQHPHPPLHHSKILFYFKELLTQLDRAGLDRTGPLNSDLY
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacgagaactacatgcacgcctctagccagatgttcgacaccatgatggac
ccgtccttcctggagtattcccacttcgtcccgatgcctcagatgacggctctgcagtca
gtggacggaccgttcctgcagatcctggagcagcccaaacagcgcggcttcaggttccgc
tacggctgtgaaggtccgtcgcacggcggcctgcccggagcctccagcgagaagaacagg
aagacgtacccgacggtgaagatctgtaactatcagggtcaggcccgggtcgtggtccag
ctggtgacggcgctgacccagctgccgcagcttcacgctcacagcctggtggggaagcag
tgcgataaagggatctgcatcgctgacctgcagtccaaagactccaccatcagttttccc
aacctggggatcctccatgtgaccaagaagaacgtggcgaagacgctggaggagcggatg
gtggaggccttcaggatgggctacaactgcggcgtcgccatccacccggagatcgacgcg
ctgcagggggaggtccgggtcccgcgggagctcagcgaccaccagcgcagcatgatcatc
agcgccgcagctgctcaggccaaagagatggacctgagcgtggtgcgcctcatgttcacc
gccttccttcccgacagcgacggcggcttctccagacgcctggagcccgtggtgtccgag
cccatctacgacagcaaggctccaaacgcctcaaacctgaagatcgtcaggatggaccgg
accgccggctgcgtgacggggggagaggaggtctacctgctctgtgacaaggtccagaaa
gatgacatccaggtgcggttctacgaggaggacgactcgggcctgacctgggaggctctg
ggcgatttctcccccacagacgtccacagacagtttgccatcgtcttcaagaccccgaag
tatcgagaccaaaacctgcagaagccgacgtccgtcttcgtccagctaaagaggaaatcc
gacaacgagaccagcgagcccaaaccgttcacctaccatccacagatcatagataaagag
gaggttcagaggaagaggcagaagacattgccgaacttccaggacttcagcggacatgga
ggaggaggaggaggcggggggctgtaccgaggtggaggaggtggaggaggtccggcttca
ggagtaggaggtccaggctcagcaggaggaggatactaccagggtttctcctcctacagc
tacggaggagcaggaggaggattctcctcagcgtattcagctggtcttggaggaggcggc
ggcacaaagcatgctttgcagagtgaagctgcagacgacagcggcgacgacagcgaccca
gacaacgacccggcgtctggcgctgtgctacgaggctctgcccagtccgacggctccgat
gtggatccagatgaggcgctgatggagacgacctgcaggcaactcgacgctctcttccga
tactccgtcaccggagactcggcgtacctgctggctccacagcgccccctgatggcgcac
aggacgacgacggagacactgggctgcatctggcggtgctgcacagccagcaggaggctg
acgagtctgacccaggtggtgtcgactctgacgggagaggagctgctcaacatgaggaac
cacctgtaccagactcctcttcacctggcggtcatcactcggcagaagcaggcggccgaa
gtgctgctgctggctggtgctgacccgactctgacagatcgccacggcaacacggttctt
cacctggcagcgcagcaggaaggagacgggatggtggagcttttactgcgacgcagagag
atgagagagttgctgcagttcagcaacacagcaggtctgtgtgccatccacctggcggtt
ctggccaatcggctgacggcgctcagggagctgctggtgggcggggccgacgtggaggct
caggagcgcagcggcggacgcaccgcgctgcacctcgccacggagaccgacaacgtgtcg
ctggccggctgcctgctgctggagggaaacgccaaggtggacagctgcaccttcaacggc
tccacccccctgcacgtggccgcggggcggggctccgtcaagctgacggctctgctgatg
gctgcaggtgccgacccgcacagggagaactttgagccgatcttcatcagggacgaggaa
gaggaggacgaggaggaggacgaggatgatgaaggctacatctcaggaaccactccagtc
aacatggccgcctgccctgaggttctggatcttctaaacggtcaggagtacgagcccagg
agccagcgagccttcgtcccgccacagggcgacctctcagttctggacgtgcaggtgaag
cgggccgtgtgtggcgcactggaggctgaaggatgctgggagaacctggctcaccatctg
ggcctcggcatcctgaacacggcgttccggctgagtccaaacccggccagaaccctgctg
gagagctacgaggtttctggtggaaccgtttcagacctgctggcggctctccggtcggca
ggcggctgcagagcgctgagcatcctggagggggcgctgcgccagaacccagacacggca
gaggaggtccagaaccctctggtccagaacctgaagcggaccttgggaacgacagcggcg
tctgcgacagcggggtggagctctccacggtgtagcgctctgattggccagcatcctcat
cctcctcttcatcactcaaagattctattctattttaaagaactgctgacacaactggac
cgggccgggttggaccggaccggaccgctgaactctgatctctactga
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