KEGG   Xiphophorus hellerii (green swordtail): 116714781
Entry
116714781         CDS       T07363                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
xhe  Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xhe03041]
    116714781
Spliceosome [BR:xhe03041]
 Complex B
  Other components
   Complex B specific factors
    116714781
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IP5PC_F Beta-prop_NOL10_N LisH LisH_PAC1 VPS8_N LisH_WDR26 PROPPIN WD_LRWD1 DUF7165 Beta-prop_IFT122_2nd PA14
Other DBs
NCBI-GeneID: 116714781
NCBI-ProteinID: XP_032411414
LinkDB
Position
23:5455870..5462197
AA seq 540 aa
MSIEVESADVVRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQVSNLKTFKLALYT
QVADISQLLNFLLQSLKWQQHQGLLPPGMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQ
KSHVECSRFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFS
RDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCVSFCKDTSQLLSASFDQTIRI
HGLKSGKSLKEFRGHASFVNEATFTPDGHHIISASSDGTVKVWNVKTTECSSTFKPLGTS
AGTDITVNNVLLLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPR
GEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWRP
NT seq 1623 nt   +upstreamnt  +downstreamnt
atgtctattgaagtggaatctgcagacgtggtgcgtctgattatgcaatatttgaaggaa
aataatctgcaccgaaccctggccacgttgcaggaggagacaacagtgtctctaaacaca
gtggacagcatagaaagctttgtggcggacatcaacagtggccactgggataccgtcctg
caagccatccagtccctcaagctaccagataaaaccttgatagatctttatgaacaggtt
gtcctggagcttattgagctgagagagctcggtgctgctcgttcactcctcagacagacc
gatcccatgatcatgctcaaacagacgcagccagagagatacatccacttggagaacctg
ttggctcgctcctacttcgatcctagagaggcttacccagatggcagcagtaaagagaag
cggcgcgccgccatcgctcaggccctggcaggagaggtcagcgtggtgccgccctcccgt
ctcatggctctgctgggacaggttagtaaccttaaaacctttaaacttgcattatataca
caagttgctgacatttcacaactcttaaatttccttcttcagtctctgaagtggcagcag
catcaaggtctcctgccgcctggtatgaccatcgacttgttcagaggtaaagcagctgtg
aaagacgtggaggaggagcgcttccccactcagttgagcaggcacataaagtttggacag
aaatctcatgtggagtgttctagattctcccctgatggtcagtacctggtcactgggtct
gtggacggattcattgaagtgtggaacttcaccactggaaaaatcaggaaggatctgaaa
tatcaggctcaagataacttcatgatgatggatgatgctgtgctgtgtatgtgcttcagt
cgagacactgagatgttagcaactggagcccaagatggaaagattaaggtgtggaagatt
cagagtggtcagtgtctgaggagattcgagcgcgcccacagcaaaggagtaacttgtgtg
agtttctgtaaagacaccagccagctgctcagcgcctccttcgatcagacaatcagaatc
catggactgaaatccggtaaatcactgaaggagttccgtggccacgcctcgtttgtcaac
gaagctacatttaccccagatggccatcacatcatcagtgcttcctcagatggaacagtc
aaagtgtggaacgtgaaaactacagagtgcagcagcacatttaagcctcttggtacgtca
gctggcacagacatcaccgtcaacaatgtcctcctgctgcccaagaaccctgagcatttc
gtagtgtgtaaccgctccaacacagtggtcatcatgaacatgcagggacagattgtgagg
agtttcagctccggtaaaagggaaggcggtgactttgtgtgctgcactctgtcgccccgc
ggcgagtggatatactgcgtaggtgaagactttgtgctctactgcttcagcaccgtcaca
ggcaaactggagagaacactgacggttcacgagaaagatgtgattggcatcgcccatcac
ccccaccagaacctgatcgccacttacagcgaggatggcttgctgaaactctggagaccc
tga

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