Xiphophorus hellerii (green swordtail): 116714836
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Entry
116714836 CDS
T07363
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K28076
finTRIM family protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116714836
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116714836
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_3
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_6
zf-RING_2
zf-RING_5
U-box
MRP-S31
Prok-RING_4
CC_BshC
Motif
Other DBs
NCBI-GeneID:
116714836
NCBI-ProteinID:
XP_032411485
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Position
3:3324116..3326150
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AA seq
553 aa
AA seq
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MEQLDRETFFCSLCLDLLKDPVAIPCGHSYCMNCITNFWDEGEKKKNYHCPQCRKTFTQR
PDLQKNTMLAALVEQLKKTGLQAAPADLHYAGPEDVACDSCTGRKLKAIKSCLFCLASFC
EKHLQPHHDVAPYNKHKLVEPSKNLQENICSRHDEVMKMFCRTDQKCICYLCSVDEHKGH
DTVSAAAERTERQRELEERRGKIHQMIQDQEKNVKLLQQEVEAINHSAEKTVEDSEKIFT
ELIRLLQKRSSEVKQQIRSQQETEVSRVKDVQEKLEQEITELKRKDAELEQLSHTEDHNQ
FLLNYPSLPALSESTHSSSINIRPLRHFEDVTAAVSELREKLQDVLRDSWTNISVMVTEV
DVLLSEPEPKSRAGFLRYSCEITLDPNTARSFLLLSEGDRKVTTMNQHQSYSSHPDRFTY
WFQVLSRESLTGCCYWEVEWSGEQVYVAVAYKNISRVGSGNECGFGRNDKSWALECYQNS
FRFGHNNIWTSISGPGSSRIGVYLDHRAGILSFYSVSETMTLLHRVQTRFTQPILAGVTF
YYFGNSAEFCKPK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggagcagctggaccgagaaaccttcttctgttccctctgtctggatctactgaaggat
ccggtggctattccctgtggacacagctactgtatgaactgtattactaacttctgggat
gaaggtgagaaaaagaaaaactaccactgtcctcagtgcaggaaaaccttcacacagagg
cctgacctgcagaaaaacaccatgttagcagctttagtggagcagctgaagaagactgga
ctccaagctgctcctgctgatctccactatgctggacctgaagatgtggcctgtgattcc
tgcactggaagaaaactaaaagccatcaagtcctgtttattctgtctggcctctttctgt
gagaaacaccttcagcctcatcatgatgtggctccatataacaaacacaagctggtggag
ccctccaagaacctccaggagaacatctgctctcgtcatgatgaggtgatgaagatgttc
tgccgcactgatcagaagtgtatctgttatctctgctctgtggatgaacataaaggccat
gacacagtctcagctgcagcagaaaggactgagaggcagagagagctggaggagagacga
ggaaaaatccatcagatgatccaggaccaggagaaaaatgtgaagctgcttcaacaggag
gtggaggccatcaatcactctgctgagaaaacagtggaggacagtgagaagatcttcact
gagctgatccgtctcctccagaaaagaagctctgaggtgaagcagcagatcagatcccag
caggaaactgaagtgagtcgagtcaaagatgttcaggagaagctggagcaggagatcact
gagctgaagaggaaagacgctgagctggagcagctctcacacacagaggatcacaaccag
tttctcctcaactacccctcactgccagcactcagtgagtctacacactcatccagcatc
aacatccgtcctctgagacactttgaggacgtgacagcagctgtgtcagagctcagagag
aaactacaggacgtcctgagagactcatggacaaacatctcagtgatggtcactgaggtg
gatgttctactgtcagaaccagaaccaaagagcagagctggattcttaagatattcatgt
gaaatcacactggatccaaatactgcacgcagttttctgttactatcagagggggacagg
aaggtgacaacaatgaatcagcatcaatcttattctagtcacccagacagatttacttat
tggtttcaggttctgagtagagagagtctgactggatgttgttactgggaggtggagtgg
agcggagaacaagtttatgtagcagtagcatacaagaacatcagcagagtaggaagtggg
aatgaatgtggatttggacgtaatgacaaatcttgggcattagagtgttaccaaaacagt
tttagatttggtcacaacaacatctggacctccatctcaggtcctggttcctccagaata
ggagtgtatctggatcacagagcaggtattctgtccttctacagcgtctctgaaaccatg
actctcctccacagagtccagaccagattcactcagccgatactggctggagttacattt
tattactttggaaactctgcagagttctgtaagcccaaatag
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