Xiphophorus hellerii (green swordtail): 116715513
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Entry
116715513 CDS
T07363
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-5-like isoform X1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04080
Neuroactive ligand-receptor interaction
xhe04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
116715513
04082 Neuroactive ligand signaling
116715513
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
xhe04040
]
116715513
Ion channels [BR:
xhe04040
]
Ligand-gated channels
GABA-A
116715513
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
DUF7205
DUF5874
Motif
Other DBs
NCBI-GeneID:
116715513
NCBI-ProteinID:
XP_032411816
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Position
24:10658078..10681268
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AA seq
562 aa
AA seq
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MARAEHYPVKAGWFFFCFFYLSLNQYLIGLPVNREQRPFIYAIWNISSHSGSSCLIRKAV
RGRREPRVIGVVRVRAGMRTGIRAFLLPGVIDGEQLLVSVNSIPERRALNNMTWLVLSLL
LLLGCQNSLCQQSSEAQKEEDANEDSTVFTRILDSLLDGYDNRLRPGLGENVTEIKTNIF
VTSFGPVSDTEMEYTIDVFFRQSWKDERLCFKGPMEMLPLNNLLASNIWTPDTFFLNGKK
SIAHNMTTPNKLLRLKDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPVSE
VVYTWTQGAAKSVVVAEDGSRLNQYHLIGQTADTEDIRTSRGQYTVMMAHFYLKRKIGYF
VIQTYMPCFMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAM
DWFIAVCYAFVFSALIEFATVNYFTKRSWAWDGKKALEAQHPKKRDPMVLSKKANNVCSA
GVNYTPNLTKDASISTISNTTSVQLRGSESKLVDPKKTYNSVSKIDKMSRIVFPVLFGTF
NLVYWATYLNREPMVKGVVAST
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagcggaacattatccagtgaaggcagggtggttttttttttgttttttttat
ctatctttaaatcaatatctgattggtcttcctgttaatcgcgaacaacggccttttatt
tatgctatctggaacatcagctcgcacagcgggtcatcttgcttgattagaaaggcggtc
cgaggaagaagggagccgcgtgtaattggagtggtgcgcgtgcgtgcagggatgaggacg
gggatcagggctttcctcttacctggtgtcatagatggcgaacaacttcttgtttccgtc
aacagcattcctgaaagaagagctcttaacaacatgacttggctggtactttccctcctg
ctcctgctcggatgccaaaatagtctttgtcagcagtcgtcggaagctcaaaaagaggag
gacgccaacgaggacagcacggttttcaccaggatcctggacagcctcctggatggctac
gacaacaggctccgcccgggactcggagaaaacgtgacggaaatcaagacgaacatcttt
gtcaccagcttcggtcctgtgtctgacacagagatggaatacaccatagacgtgttcttt
cgtcaaagctggaaggatgagcgtctctgcttcaaaggccccatggagatgctcccatta
aacaacctgctggctagcaacatctggactcctgataccttcttcctcaatggtaagaag
tccatcgctcacaacatgaccacacccaacaagctgctgagactgaaggacgacggaacc
ctgctctacacaatgaggttgacgatctcagcagaatgccccatgcaactggaggacttt
cccatggacgcccacgcctgcccgctcaagtttggcagctatgcctatccagtctcagag
gtggtctacacatggactcaaggagccgctaagtctgttgttgtggcagaagatggttcc
agactcaaccagtaccatctcattggacaaacagctgacacagaggacatacgcaccagc
cgaggacaatacactgtgatgatggcgcacttctacctgaaaaggaagatcggatatttt
gtcatccagacgtacatgccatgtttcatgaccgtaatcctgtcccaggtgtcgttttgg
ctcaacagagagtccgttcccgcgcggaccgtgtttggggtgactacggtactgactatg
accacactcagcatcagcgccagaaactcgcttcccaaagtagcctacgcaacagccatg
gactggttcattgctgtctgctatgctttcgtcttttcagctcttatcgagtttgccaca
gtgaactacttcaccaaaaggagctgggcctgggatggcaagaaagctctggaagcacag
caccctaagaaacgggacccaatggtgctctcaaaaaaggccaacaacgtttgctcggca
ggtgtcaactacacccccaaccttaccaaggacgcgtccatctctaccatctccaatacg
acgtcggtgcagctgcggggctcagagagcaaactggtggaccccaaaaagacatacaac
agcgtcagcaagatcgacaagatgtcgcgaatagtgttccccgtcctcttcggaaccttc
aacctcgtctactgggccacatacctgaacagagaaccgatggtgaaaggagttgtcgct
tccacataa
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