Xiphophorus hellerii (green swordtail): 116716056
Help
Entry
116716056 CDS
T07363
Name
(RefSeq) uncharacterized protein LOC116716056
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116716056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116716056
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116716056
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116716056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
ANCHR-like_BBOX
RING_XB3-XBAT31
zf-RING_5
HisKA
DUF948
DUF5517
P4Ha_N
Motif
Other DBs
NCBI-GeneID:
116716056
NCBI-ProteinID:
XP_032412700
LinkDB
All DBs
Position
24:complement(11468680..11477426)
Genome browser
AA seq
792 aa
AA seq
DB search
MSGKLWTEEQFNCPVCLDLPNDPVTIPCGHSYCMGCIKDFWSKDDPKGIYSCPQCRQTFC
PKPPLSRNTMLAEAVEQLRKGALQSEVRDSIRSARELSSRSKSRLSTGAVLCDMCKGEQR
AAVKSCLACMSSFCETHLKPHQTKKSLKQHELIPPTSNLAEKICTQHKYLQEFFCRQCKM
FVCWLCTSNQHKDHECVSTKVERQEREKLLSDIQADNQLKLKHREQELKDMKKMMEEVKR
SGDKVHDETENILGEMLRSVERLQELLEEVLDQSSLEKMNQAQEVADNLEAEIRERRKRD
TEMKDLADCGDNIYYLQTCDTMSSPLDCGDLPAVHVNHNATFEPVLEVVLALRDRVEDLC
NQELGKINKQVNETKLFTLGNSSRLGGKKVFRDLFSGLSKSNTNNRNPTSSISLDVRSTD
RQGLALRGPNVRSRDAPRDRGNTNSPRRRREEREAERESNPSPTPSRRGGPSLWSRSSQN
PVAPPAAMAPTPIPASPIPAPAPASSSAFSRMASISSLFRSHRRGANQATPVNNTATAGG
NPGGMVDLLETPTEINPGLFLDTPLPNAMTQAFPAAFPALREINLDSIQAPEPRSREEFL
QYSVILTLDPNTAHKRLVLSEGNTKATLQGPTQPYADTPQRFDGWTQVMCQSPLQAQRSY
WEVEWRGRGSSMGVAYASLSRKGNDARSGLGYNAQSWTLELSDTCCSAMHANEKRDIAVT
YSPRLGVYADLSAGTLAFYSVADNMTHLHSFRANFTQPIYATFGVGSGVGVGLDFALGQF
SSSCDSIKICPL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaagctgtggacggaggagcagttcaactgccccgtgtgtcttgatctcccc
aatgatccggtcaccataccctgcggacacagctactgcatgggctgcatcaaagacttc
tggagcaaggatgaccccaaagggatttacagctgcccccagtgccgccagaccttctgt
cccaagccgcccttgtccagaaacaccatgctggccgaggctgtggagcagctccgcaaa
ggggccctccaatcagaagttcgagactccatccgaagcgctcgcgagttgtcctctaga
tccaagtccaggctgtccaccggagccgttctgtgcgacatgtgcaaaggggagcagcgt
gccgctgtgaaaagctgcctggcgtgtatgagctccttctgcgagacccacctgaagcct
caccagaccaagaagtctctcaagcagcatgagctcatcccgccgaccagcaatctggca
gagaagatctgcacccagcacaagtacctgcaggagttcttctgtcgtcagtgcaagatg
tttgtctgctggctgtgcaccagcaatcagcacaaagaccacgagtgtgtgtccaccaag
gttgagcgacaggagagagagaagctgctttcagacatccaagcagacaaccagctgaag
ctgaaacacagggagcaggagctgaaggatatgaagaagatgatggaagaagtgaagcgt
tctggggacaaggtgcacgatgagacggagaacattctgggcgagatgctgcgctccgtg
gagcgtctgcaggagctgctggaggaggtgctggaccagtccagcctggagaagatgaac
caggcccaggaggtcgccgacaacctggaggccgagatcagggaacggaggaagagggac
acggaaatgaaggacctggcggactgtggagacaacatctactacctccagacgtgcgac
accatgagcagtccccttgactgcggcgacctgccggccgtgcatgtcaatcacaatgcg
acctttgaacccgttctagaagtagtgctggccctcagggaccgagtggaggatctgtgc
aatcaggagctggggaagatcaacaagcaagtcaatgaaaccaaactgttcactttggga
aactccagccggttgggagggaaaaaagtatttcgtgatttgttttccggtctgagtaaa
agcaacaccaacaaccgtaacccgacttcaagcatttcactggatgtccgaagtaccgac
cgacaaggactagcactcagaggtcccaacgtgaggagcagggacgcacctcgagacaga
ggaaacacaaactcacccagacggagacgagaggagagagaggctgagcgtgagtctaac
cccagccccacccccagccgcagaggggggccgtctctctggagcaggtctagtcaaaac
ccggtcgcccctcctgcagctatggctccgactccaatcccagcctctcctattcccgct
ccagctccagcttcatccagtgcgttcagcaggatggcgtcgatcagcagcctgtttcgc
tcacaccgacgaggcgccaaccaggccaccccggttaataacaccgcaactgcaggagga
aacccgggcgggatggtggatctgttagaaacaccaacagagattaacccaggtctgttc
ttggacacgcctctgccgaacgccatgactcaagcttttcctgcagcttttcctgcattg
agagaaatcaaccttgacagcatccaggcaccagaaccgagatccagagaggagtttctc
cagtattctgtgatcctgacccttgaccccaatacagctcacaagcgcttggtactctct
gaaggcaacaccaaggctaccctgcagggtccaacgcaaccgtacgccgacacaccccag
cgcttcgacggctggacccaggtgatgtgccagagcccgctgcaggcccagcgctcctat
tgggaggtggagtggagggggcgtgggtcctcaatgggcgtggcctacgcctcgctgagc
aggaagggcaacgacgcccggtccggcctcggctacaacgcccagtcctggacgctggag
ctgtccgacacctgctgctcggcgatgcacgccaacgagaagagggacatcgccgtcacc
tactcgccccgcctgggcgtctacgccgatctatcggcggggacgctggcgttctacagc
gtggcggacaacatgacgcacctccatagcttcagggctaacttcacccagcctatttat
gcgacgttcggagtggggagcggggtcggggtgggtctggacttcgccctgggtcagttc
tcatccagctgtgacagcattaagatctgtccgctgtga
DBGET
integrated database retrieval system
