Xiphophorus hellerii (green swordtail): 116716086
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Entry
116716086 CDS
T07363
Symbol
mbd5
Name
(RefSeq) LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 5
KO
K23219
methyl-CpG-binding domain protein 5
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116716086 (mbd5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116716086 (mbd5)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
116716086 (mbd5)
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
116716086 (mbd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWWP
MBD
Motif
Other DBs
NCBI-GeneID:
116716086
NCBI-ProteinID:
XP_032412760
LinkDB
All DBs
Position
24:complement(14885860..14911440)
Genome browser
AA seq
1409 aa
AA seq
DB search
MNGGKDCEAGDERQAVPVQVPIGWQRKAEHGGGVVYVSPSGSLLSSLEQVKTYLLTDGTC
KCGLECPLILHKVFNFDPGAAVKQRTAEDVKADEDVTKLCIHKRKLLAVATLHKSMETHP
PLALTSPGGGTSSAVAVHSTTQRAIRTKAHDGLPNAVGPECKNPFKMIMVAGQQQQQRLF
PPQEAVGGPQPELYSGYSRAQRLPSGDPGTKSPYRVGYGGMLSPSSSSAKLYGDGSQSPN
TDSLGSPEGFHRTNPCGFPGAGSPGSVSIHGNPRTPLSPPRVMLHGSPAGQPSCAMTGRT
STPLSPTATAKSPVMNMNMPRGNFPPGMDLPRAAFHHKSQPPLHSVPPPPSIPPPCALQK
RQLTSEKDPLGILDPIPSKPVCQPPNHAPNLPNFQPNIHSQVQMMNVNIPPPAIVPLPSN
LPLPTVKPGPVGHGGNVQRTQQSGPSSSMSPSPVTSPVHMGGPVLGRIEASPHRSRSSST
SSEHGSFAMPSGHQAPCATMKVPPRSPRSAMGSPRPAMPSSPSTNKTDPLHQYKDSQLLP
GMGNPVGTHQHSNSMYSPTSSSSSSSLATSSTSQKGHPGLLGMPLNQILNQQNAASFPAS
SLLSAAAKAQLANQNKLGPAGNSTPGMAAGGAVGMPAMGAAGGGNGGGVGPRSMEGHSTL
NPMLPPNSTMLLNTPEGQSGRAALRDKLMAQQRDPTRKRKQSSGNAGNHDSGNNMVFNML
NKQGMGGPHIQGASATEQLRKVGRMGNLHPNASMAQLLQSMSCHSSHNMAGNSHRPGLSS
GSHGAAPLHYNDSAGMQQNLLVQQRLRPPGDPIQHCQNLDPSGGHLVPRPGQYPDMMAQM
QAQSMNTCGPMGPGGGPIAPDGMPLVRPNPNPPPLSHPGPHPSQLHSMRRTSIVLHGGGD
GGCNQSVSDAGIGMGTMQPHVNAGGAQMYQQQVHQRMPQAVSSHPAYQGQQHFSDNQHYK
DGGSNGSSMACLYPNYQQGMLPHPQFAEGQQSEGLPAGSERGAGGGPEVVDAIYRAVVDA
ASKGMHVTITTTVSGTTQASPVPALSAMSAFTANVGEPVNLPQAVSAVLHGHQDGDRPRQ
ARSGRGQKNMDAGKSTPDGPEPNDYFRSPGRGTPRGQWDGEAPHGGGFEAQSNNAWGGEE
FLECSTQVRSSPLMERPASLAPAPPCPAEGSNDHSLALPHDKTFFDRFNNCNRTPANYKE
RLEQTVERCAHINGATPHFNARAYGEVLGPPRQELTGDDQSPGSSTSLEGPLATPKDYSH
YNGHFNGMAPSPSDTKSLSSEEDLRQPDSPSSELLHYRSRTFNMGELVWGQLKGFPPWPA
KLAGDDQVHCAAMQLREQAKVEPEKLKTLTHDLEALDRAAKRGLKPKLNNPLQVALHEAM
SELDKMSGTLPSRERQLMLPKPKRRKISR
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaatggcggaaaggactgtgaggcgggagatgagaggcaggccgtccctgtccaggtc
cccattggttggcagcgcaaggcggagcacggcggaggcgtcgtgtatgtgagtcccagc
ggctcgctgctgtccagcttggagcaggtgaagacctacctgctcacagatggaacctgt
aaatgtggcctggagtgtccgctcatcctccacaaggtgttcaacttcgacccaggggcg
gctgtcaaacagaggacggcggaggatgtgaaagcagacgaagacgtgaccaaactctgc
attcacaagagaaagctcctggctgtggccacgcttcacaagagcatggagacacacccg
cctctggcactgactagcccaggaggaggtacatcatctgcagttgctgtgcattctaca
actcaacgagcaataaggactaaagcccacgatgggttgcccaatgctgttggccctgag
tgcaagaacccgttcaaaatgataatggtggccggacagcagcaacagcagaggttgttt
ccacctcaggaggcggttggaggcccgcagcctgagctttactctggatactcccgggca
cagaggctaccgagcggggatcctggaactaaatctccatatcgggtggggtatggaggc
atgttgagcccatcttcctccagtgctaaactgtatggagatggctctcagtctcccaac
acagactctctgggcagccctgagggatttcataggaccaatccttgtggctttccagga
gccggtagtcccggttcagtatccatccatgggaaccctaggactcctctttccccaccc
agagtaatgcttcatggctctcctgcaggccagccatcctgcgccatgacaggaaggact
agcacgcccctctcccctacggccactgccaaaagccctgtcatgaacatgaacatgccc
cgggggaacttcccacccggcatggatctgcctcgagcagcatttcatcataaatctcag
ccccctctgcattctgtacctcccccgccatctataccaccaccctgtgctcttcagaaa
aggcagttgacctctgaaaaagaccccttaggcattctggatcccatccctagcaagcca
gtttgccagcccccaaaccatgcccccaacctgcccaacttccagcccaacatccactct
caggtacaaatgatgaatgtaaacatcccccctcctgccatcgttcccctgccaagcaac
ttacctttacccacagtgaagcctggacctgtgggccatggtggcaatgtgcaaaggact
caacagagcggtccttcctcctccatgtccccctcgcctgtcacttcccctgttcacatg
ggtggaccggttctggggcgaatcgaggcctcgcctcatcgctcacgttcctcctccacc
tcctccgaacacgggagctttgcaatgccctcgggtcaccaggccccatgtgccaccatg
aaggttccccctcgttctcccaggtcggctatggggtctccccggcctgccatgccctca
agcccatccaccaacaaaaccgatccacttcaccagtataaagactcccagctgttgcct
ggaatgggaaacccagtcggcacccatcagcacagcaactccatgtactcccccacctct
tcctcctcttcgtcctctctggcaacttccagcacttcccagaagggccaccctggtctc
cttgggatgcccctcaaccagattctgaaccaacagaacgccgcttccttcccagccagc
agcctcctctcagccgcagccaaagcacagctagcaaatcaaaacaaactcggccctgct
ggcaacagcactcccggcatggctgctggcggtgcggtcggcatgccggcaatgggggcg
gccggcggaggtaacggtgggggtgtcggccctcgaagcatggagggacacagcacttta
aatcccatgctcccgccaaactccaccatgctgctaaacactccagaaggtcagagtggc
cgggcggcgctgcgagacaaactcatggcccaacagagggatcccacacggaaacgtaag
cagtcgtccggcaacgctgggaaccacgacagtggcaacaacatggtcttcaacatgctc
aacaagcagggcatgggtggaccccacatacagggggccagcgctacagagcagctgcgt
aaagtgggccggatggggaacctgcaccccaacgcctccatggctcagctgctgcagtcc
atgagctgccacagttcccacaacatggcggggaacagccaccgccctgggctcagttcc
ggctcacacggagcggcgccgcttcactacaacgacagtgcgggcatgcagcagaacctc
cttgtccagcagaggttgcggcctccaggagatcccatccagcactgccagaacctggac
ccgtcagggggccacctggtcccccgtccaggacagtaccccgacatgatggcccagatg
caggctcagtccatgaacacctgcggtcctatggggccaggcggcggaccgatcgcaccg
gacggcatgccgctggtacgccccaaccctaacccaccaccactgtctcatccgggtccg
cacccttcacagctccacagtatgaggaggacaagcatcgtgctgcacggagggggcgat
ggaggctgcaaccagtcggtctctgatgcaggcatcggtatgggcaccatgcagcctcat
gtgaacgctggtggagctcagatgtaccaacagcaggtccaccagcgaatgccacaggcg
gtttcctctcacccagcctaccaggggcagcagcacttctctgacaaccaacactacaaa
gatggcggcagcaacggcagctccatggcctgcctctatccgaactaccagcagggaatg
ttgccccaccctcagtttgcggaggggcagcaaagcgaggggctcccggcaggctctgag
cggggcgccggcggtgggccggaggtggtggatgctatctacagagcggtagtggacgcc
gccagtaagggcatgcatgtcaccatcaccaccactgtgagcgggaccacgcaggccagc
ccggtgcccgccctcagtgccatgagtgccttcactgccaacgtgggggaacccgtcaac
ctcccccaggcggtcagcgccgtcctgcacgggcaccaggacggagaccggccgcggcag
gccaggtcagggcgcggacagaagaacatggatgctgggaagagcactccagacggtcca
gaacccaacgactacttccgctcccccggccgaggaacgccaagagggcagtgggacgga
gaggcgccacacggcggaggctttgaggcgcagagcaacaacgcctggggaggggaggag
ttcctggagtgctctacccaagtgagaagtagtcctctgatggagaggcctgccagcctg
gccccggcgccgccctgccccgccgagggctccaacgaccacagcctggcccttccccac
gacaaaaccttcttcgaccggttcaacaactgcaaccggacccctgccaactacaaggag
cgtctggaacaaacggtggagcggtgcgcccacatcaacggcgccacgcctcatttcaac
gccagggcttacggggaagtcctgggccccccgcgacaggagctgacgggggacgaccag
tcgccgggctcctccaccagcctggagggccccctggccacgcccaaagactacagccac
tacaatggtcacttcaacggcatggcgcccagcccctcagacaccaagagcctgagcagc
gaggaggacctgcggcagcccgactcgccctcgtccgagctcctccactaccgctccaga
accttcaacatgggggagctggtctggggccagctgaagggcttccccccctggcccgcc
aagctggccggtgacgatcaggtgcactgcgccgcaatgcagctgcgagagcaggccaag
gtggagccggagaaactaaaaacactaacccacgacttggaggcacttgaccgagccgcc
aagagaggcctgaaacccaaactgaacaaccccctgcaagttgctctccatgaggccatg
agcgagctcgacaaaatgtcaggcacactcccatctagggaacgtcagctgatgcttccc
aagcccaagaggaggaaaatatccagataa
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