Xiphophorus hellerii (green swordtail): 116716112
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Entry
116716112 CDS
T07363
Symbol
atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04136
Autophagy - other
xhe04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116716112 (atg13)
04136 Autophagy - other
116716112 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116716112 (atg13)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116716112 (atg13)
Membrane trafficking [BR:
xhe04131
]
Autophagy
Autophagosome formation proteins
ULK complex
116716112 (atg13)
Atg1 complex
116716112 (atg13)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
116716112 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
116716112
NCBI-ProteinID:
XP_032412807
LinkDB
All DBs
Position
24:complement(7199139..7206093)
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AA seq
536 aa
AA seq
DB search
MDGDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYNR
LSVLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLGGLGEGFQTVRVGVVGTPV
GTVTLSCAYRTNLAFMSSRQFERSAPIMGIIVDHFVDAPCGNQRPITMGQPCNFRAPDED
DGGAFAGVQDSQEVCTTSFSTSPPSQCVCTLSPSPSKLSKPLPLDSLQLPLAPGLVTHNL
YASRLSYQPAPTGGAAEFNAIQVKEGGNVLVPAQPQPQPPHGADVHLTVENAPNTPSSSG
DEDGLLQSGEGRRDDGRRSVSPSDPVESLSAFTRKVGAFVNKPNTQITAASLDLPFAAFA
PRGLDSEENDPMVRPPDSPPSQSPLQASLHSQGSDGSGPQDDFVMVDFRPAFSKDDLLPM
DLGTFYREFQNPPQLASLSLHTSSQSMADDLDSLPEKLRVYEKNIDEFDAFVDMLQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggacggtgacctgagtccacaggataagaaagacttggacaagttcatcaagtttttt
gccttaaagactgttcaggtgatcgttcaagctcgcttgggggagaagatctgcactcgc
tcgtcttcgtcacccactggctcagactggtttaatttggccatcaaagacatcccagag
gtcactcatgaggccaagaaggcgctggccggccaacttccaggcatcggccgatccatg
tgtgtggagatctccctaaagacctcagagggagactccatggagttagagacttggtgc
ctggagatgaatgagaagtgcgataaggacattaaagtgtcgtacactgtctataaccgg
ctgtctgtcctcctaaaatctctgctggccatcaccagagtgactcccgcctataagctg
tccagaaagcagggccacgactacgtcatattatacaggatctactttggggaagtccag
ctgggtggattaggagaaggtttccaaacggtgcgcgtcggtgttgtcggcaccccagtc
ggcacggtaacgctgtcatgtgcctaccgcaccaacctggcgttcatgtccagcaggcag
ttcgaacggtcggctcccatcatggggatcatcgtggatcactttgtggacgcgccctgc
ggcaatcagcgtccaatcacaatggggcagccctgcaacttcagagccccagatgaggac
gacgggggagcgtttgctggagttcaggactctcaggaggtctgcaccacctccttctcc
acctcccctccctctcagtgtgtctgcactctgagtccgtccccttccaaactgtccaag
cccctcccactggacagtctccagctcccattggctccaggacttgtcactcacaatctc
tatgcttccaggttgtcctaccagcctgcacctacaggaggagctgctgagttcaacgca
atccaggttaaagaaggcgggaacgttctggttccggctcagcctcagcctcagcctcct
catggagcggatgtccatctgacggtagaaaacgctccaaacacaccgagcagcagtggc
gatgaagacggcctgctgcagagtggtgagggaagaagggacgatgggagaaggagcgtc
tctccctccgacccagtggagtccctcagcgcgttcacaaggaaggttggggcttttgtg
aataaacccaacactcagataacagctgccagtctggacctcccattcgctgcatttgct
cctcgtggcctggactctgaggagaacgatcccatggtgcgtcctccggactctcctccc
tctcagtcgcccctgcaggccagccttcactctcagggctcggacggatcgggaccgcag
gacgacttcgtcatggtcgactttcgtccagctttctctaaagacgaccttttgccgatg
gatctgggcactttctatcgagagtttcagaaccctccacagctggccagcctctcgctg
cacaccagctcccagtcgatggctgacgacctggactctctgccggagaaactgcgtgtg
tacgagaagaacattgacgaatttgacgcgtttgtggacatgcttcagtag
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