Xiphophorus hellerii (green swordtail): 116716933
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Entry
116716933 CDS
T07363
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
xhe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116716933
09123 Folding, sorting and degradation
03018 RNA degradation
116716933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116716933
03041 Spliceosome [BR:
xhe03041
]
116716933
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116716933
mRNA cycle factors
Stress granule specific factors
116716933
Spliceosome [BR:
xhe03041
]
Complex C
Other components
Complex C specific factors
116716933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
RRM_occluded
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
116716933
NCBI-ProteinID:
XP_032413814
LinkDB
All DBs
Position
3:complement(29990916..29997433)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPGPRWAAQGVRPQHFQNMPNAMRPSAPRPQTFNTIRPTTTTNTQVPRM
MASQRMPTQALGQRPASASATAAPVRAMPGYKYAAGVRNPQQHMASQPQVAMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgcgcctagctaccccatggcctcgctctacgtaggagacctgcaccca
gatgttaccgaggccatgctctacgagaaattcagcccggccggacccatcctgtcgatc
agagtgtgcagagacatgatcacccgccgttcgctgggatatgcgtatgttaacttccaa
caaccagctgatgctgaaagggctttggacacgatgaacttcgatgtgattaagggcagg
cctctccgcatcatgtggtcccagcgtgacccctccttgaggaagagcggggtgggaaac
atcttcatcaaaaacctcgacaagtccattgataacaaggccctttatgacaccttctct
gcgtttggaaacatcctctcttgcaaggtggtttgtgatgaaaatggctcaaaaggttac
ggttttgtgcactttgagacccacgaagcagctgagcgtgccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtatttgtcggccgcttcaagtcgcgcaaagagagggag
gctgagctgggggcacgtgccagagagtttaccaacgtttacatcaaaaacttcggggag
gacatggatgacgagaagctgaaggagttatttagtaaatatggtcctgcgctcagcatc
cgggttatgacagacgatggcggcaagtccaagggattcggctttgtcagctttgagaga
cacgaagacgctcagaaggccgtggacgacatgaacggcaaagaactgaatggccgacag
gtgtatgtgggccgcgcgcagaagaagggcgagcgccagaatgaacttaaacgcaaattt
gagcagatgaagcaagatcgcatgaccagataccagggtgtcaacctgtacgttaaaaac
ctcgacgacggcctagatgacgagcgtctgcgcaaggagttctccccgttcgggaccatc
accagtgcgaaggtgatgatggagggcggccgcagcaaaggtttcggctttgtgtgcttc
tcgtcaccagaagaggccactaaagccgtaacggagatgaatgggcgcatcgtggccacg
aagcctctgtatgtggcactggctcagcggaaggaagagcgccaggcccacctgaccaat
cagtacatgcagaggatggccacggtccgggccgtgcccaaccctgtcctcaacccctac
cagcccgctccaccctcaggctacttcatggcagctattccacaggctcagaaccgcgct
gcatattactccgccaaccagttggcccagctccgcccgggtcctcgctgggccgctcag
ggagtgcgacctcagcatttccaaaacatgcccaacgccatgcgtccgtcagcaccaagg
ccccagaccttcaacaccattcgtcccaccactaccaccaacacccaggtcccgcgcatg
atggcctcccagcgcatgcccacccaggccctcggccagcgccctgccagcgcttcagcc
actgcagccccagtccgtgccatgcctgggtacaaatatgctgctggtgtgcgcaaccca
cagcaacacatggcgtcccagccacaagttgccatgcagcaacctgctgtccatgtccaa
ggacaggagcccctgactgcttccatgctggctgctgctcctcctcaggagcagaagcag
atgctgggtgagcgtctgttccccctgatccagaatatgcatcccagcctggctggcaag
atcaccggtatgcttctggagatagacaactctgagctgcttcacatgcttgagtcacct
gaatctctgcgctccaaggtggatgaggctgttgctgtgctccaggcccaccaggccaaa
gaggctgcgcagaagtccaccacacctgccggtgttcctagcgtctaa
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