Xiphophorus hellerii (green swordtail): 116716990
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Entry
116716990 CDS
T07363
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116716990 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xhe03041
]
116716990 (dhx16)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116716990 (dhx16)
Spliceosome [BR:
xhe03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116716990 (dhx16)
Complex C
U4/U6.U5 tri-SnRNP related factors
116716990 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
PWI
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
116716990
NCBI-ProteinID:
XP_032413928
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All DBs
Position
3:1479557..1493607
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AA seq
1052 aa
AA seq
DB search
MAQLEQWVNDRLHDILGLSDRYVSQFMIGIARKASSPEDLVSRLEQTGTIDIDQSVSAFA
KELFEKIPRQQVIEKPSKALERQAIEMDRKNRTYTLLEDSDSGEEAAADKQRGKKKKDKD
RGSKRKNIRQKKASESSSDDETPKRGGSVLEDHRSVKKEEEEEEWEKEERERLLDIEERD
AFAQRVRQKDKEKTRNIAERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWEYLKKRE
EEKLEDLEAEIIDDEYLFSKEELTERERRELEYKRTLRDLAKDYKQAGAKEQEERKNRYY
MPEERRSKDVPQRDLELDEAPMELGGEQGRWEEERLKTASLSFGARKERELGLKQEQDRY
QLVLEEEEMIDFVSTAITMKGTRSDKDEAEPALSQAELKKLSMQEVRRSLPIFPYREDLL
AAITEHQILVIEGETGSGKTTQIPQYLLEDGYTKGGMKIGCTQPRRVAAMSVAARVAEEM
SVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLHT
DILFGLIKDIARFRPGLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPEA
DYLDACVVSVLQIHVTQPPGDILVFLTGQEEIEACCEMLQERCRRLGSKIAELVVLPIYA
NLPSDMQAKIFSPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESL
IVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLKS
LGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMIL
ASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQWV
ESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMERIEVEVVSCSGDNVPIRKAVTAGYFY
HTARLSKGGYRSVKHQQTVFVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWLL
EVAPHYYKSKELEDSSSKKMPRKQGKAREELG
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctggagcagtgggtgaacgaccgtctccatgacatcctcggcctgagcgac
agatacgtctcccagttcatgatcggcatcgctcgcaaagcgtccagcccggaggacctg
gtgagccgcctggagcagacgggaacaatcgacatcgaccagagcgtctctgccttcgca
aaggaactgtttgaaaaaattccccgtcagcaggttattgagaagccgtccaaagccctg
gagcgccaggccatagagatggacaggaagaaccggacctacacgctgctggaggacagc
gacagcggcgaagaggcggcggcagacaaacagagaggcaagaagaagaaagacaaggac
agaggaagcaagaggaagaacatcagacagaagaaggccagcgagtcgtcaagcgacgat
gaaacgccaaagaggggcggttctgtcctggaggaccacagatctgtgaagaaagaagaa
gaagaagaagagtgggagaaggaggagagggagcgactgctggacatcgaggagagagac
gccttcgctcagagagtcaggcagaaagacaaagaaaagacgcggaatattgctgagcgg
acggataaaaaggcctatgaagaagctcagaaacgactgaagatggctgaagacgatcag
aagaacatgttgccggagctgaggaagcgttcccgttgggaatatctgaagaaaagagag
gaggagaagctggaggacctggaggcggagatcatagacgatgagtatctgttctccaag
gaggagctgacggagcgcgagaggcgggagctggagtacaagcggaccctccgggacctg
gccaaggactacaagcaggccggggccaaggagcaggaggagaggaagaaccgctactac
atgcctgaggagaggaggagcaaggacgtcccccagagggatctggagctggacgaggcc
cccatggagctggggggggagcagggccgctgggaggaggagcggctgaagacggcctcc
ctcagcttcggagccaggaaggagcgcgagctgggcctaaagcaggagcaggaccggtac
cagctggttctggaggaggaggagatgatcgacttcgtcagcacggccatcaccatgaag
gggacgcgctccgacaaggacgaggcggagccggcgctgtcgcaggccgagctgaagaag
ctctccatgcaggaggtgcgccgcagcctgcccatcttcccctacagggaggacctgctg
gccgccatcactgagcaccagatcctggtcatagagggggagacgggctccgggaagacc
acccagatcccgcagtacctgctggaggacggctacaccaaaggagggatgaagatcggc
tgcacgcagccccgcagggtggcggccatgtctgtggcggcccgcgttgccgaggagatg
agcgtgaagctgggtaacgaggtggggtacagcatccgcttcgaggactgcacgtctgaa
cgcaccgtgctgaagtacatgacggacgggatgctgctccgagagttcctgactgaaccc
gacctggccagctacagtgtgatcatcatcgatgaggcccacgagcgaacgctccacacc
gacatcctgttcggtctcatcaaagacatcgctcggttccgacccggcctgaaggtcctg
gtggccagcgccacgctggacacggagcgattttcctgcttcttcgacgacgctccggtg
ttcaggattcccggcaggagattccctgtcgacattttctacactaaagctccggaggca
gattacctggacgcttgtgtggtttcagtgctgcagattcacgtcacccagcctcccgga
gacatcctggtcttcctcaccggacaggaggagattgaagcgtgctgcgagatgctgcag
gagagatgcaggcgtctgggctcaaagatcgctgagctggtcgtcctgcccatctacgcc
aacctgccgtccgacatgcaggccaagatcttcagcccgactcctcctggagcccggaag
gtggtggtggccaccaacatcgcagaaacgtctctgaccatagacggcatcatctacgtc
atcgaccccggcttctgcaaacagaagagctacaacgcgcgcacgggcatggagtcgctc
atcgtcacgccttgctccagggcttcagccaatcagagagcagggcgggcgggcagagtg
gctgctgggaaatgtttccgcctctacacggcctgggccttcaaacacgagatggaggag
acgacggtccctgagatccagaggaccaacctgggcaacgtggtgctgctgctgaagagc
ttaggaatcaacgacctgattcactttgacttcatggacccgcctccccatgagaccctg
gtgctggctctggagcagctgtacgcactgggagccctcaaccacctgggggagctcacc
aagctgggtcgcaggatggccgagttaccggtggatcccatgctgagtaaaatgatcctg
gcctcagagcagtacaagtgttcagaggaagtgctgaccatcgccgccatgctgtcggtg
aacaactccatcttctaccggcccaaagacaaggtggtgcacgccgacaacgccaggatg
aacttcgtggttccgggcggagaccacctggtgctgctcaacgtctacacgcagtgggtg
gagagcggctactccacccagtggtgctacgagaacttcatccagttccgctccatgagg
cgagcccgggacgtccgggaccagctggagggtctgatggagcgcatcgaggtggaggtg
gtcagctgcagcggggacaacgtccccatccgtaaggcggtgacggccgggtacttctac
cacacggcgcggctcagtaagggcggctaccggtcggtgaagcaccagcagacggtgttc
gtccatcccaacagctcgctgttcgaggagcagccgcgctggctcatctaccacgaactc
gtcttcaccaccaaggagttcatgagacaggtgatagagatcgacagcggctggctgctg
gaggtggcgccgcactactacaagagcaaagagctggaggacagcagcagcaagaagatg
ccccggaagcagggcaaggcccgggaggagctgggctga
DBGET
integrated database retrieval system
