Xiphophorus hellerii (green swordtail): 116717034
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Entry
116717034 CDS
T07363
Symbol
gsdme
Name
(RefSeq) gasdermin-E isoform X1
KO
K22146
gasdermin-E
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
116717034 (gsdme)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xhe02000
]
116717034 (gsdme)
Transporters [BR:
xhe02000
]
Other transporters
Pores ion channels [TC:
1
]
116717034 (gsdme)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Gasdermin
Gasdermin_C
DevR
Med15_C
Motif
Other DBs
NCBI-GeneID:
116717034
NCBI-ProteinID:
XP_032413990
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Position
3:complement(17973406..17979682)
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AA seq
461 aa
AA seq
DB search
MFAIATKNFVKEVDNRGLLIPVSSLNDNLELLTVVVKRERSWFWQKPKYLPTDFTLNDLL
TGDSPITPAVLDLDFIKYSGTYGGDMQGTVDASFVKAKLNVKREGSSKLQLSFGSLKKEE
VDVPKLMRESKGRVLDMSHSLIQQTKERKKNVFGIVKERIVTTQPCSVVEDVQQRGWLVG
TLIPCIPKVSKILLTESGKLSKDSNVTLEIPPHTTMAYGIIELEIKSDGNFELCVMSDGG
FEVDGHGKKSLLCFSVAKSNVIEQELEKLKDNFQQLSTLPASTRSSLLQHITGLMQEPAA
VGALQIMLDRMYLGKKPSLNDDGLKESQQQSIQAIFEVLEQSGAEESTQSPVLTALHLVV
SALEELPDDCLPVLSVCSNPATLQTLELLVQCVSGARETTLSSAALPDDDYERTEHIFAS
CNVSLQRDSDMLRVEIKHEPGNHPLILCIAIKSLASLACGC
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccatagcaaccaaaaacttcgtgaaggaggtggataataggggcttactgatc
ccagtgtccagcctgaatgacaacttggagctcctgacggtggtggtgaagcgtgaacgc
tcctggttctggcagaaacccaaatatcttccaactgacttcaccctgaatgacctgctg
acaggcgattcgcccataacaccagctgtgctagatttagacttcattaagtacagcggc
acatatggtggcgacatgcagggaaccgtggatgccagttttgtcaaagccaaattgaac
gtaaagagggaaggctcctccaaactccagttgtccttcggcagtctgaagaaagaggaa
gtggacgtcccgaaactgatgcgagaatccaaaggcagagttctggacatgtcgcactct
ctgatccagcagacgaaagagagaaagaaaaatgtgtttggcattgtgaaggagcgcatc
gtgaccacacagccatgttcagtcgtagaggacgtgcagcagcgaggatggctcgtgggg
actctaattccctgcatccccaaagtgtctaaaattttactgacggaaagtggaaagttg
agcaaagacagcaacgtcacattggagattcctcctcacaccacgatggcctacgggatc
atagagctggagatcaaaagcgacgggaactttgagctgtgtgtgatgtcagatggaggt
tttgaagtagacggccatggcaagaagagtctgctgtgtttctcagttgcaaagagcaat
gtgattgagcaggaactggagaaactgaaggataatttccagcagctttccaccctccca
gcctccaccaggtcgtctctgctccagcacatcacaggactgatgcaggaaccggcagcc
gttggcgcacttcagatcatgctggaccggatgtatctgggtaagaaacccagcctgaat
gatgacggattaaaggaatctcagcagcagagcatccaagcgatttttgaggtgttggag
cagtctggtgcagaggagtcgactcagagcccagtcctcaccgcattgcatctggttgtc
agtgcattagaggagttaccagatgattgtcttcctgttttaagtgtttgcagtaatcct
gcaaccctacagactttggagctactggtgcagtgtgtgtcaggagcccgggagacgact
ctgagcagcgcagcattgccagatgacgactatgaaaggactgaacatatttttgcctcc
tgtaatgtgtctctacagagagacagcgatatgctacgggttgaaatcaagcatgaacca
ggaaatcatcccctgattctctgcattgctattaaaagtctcgcctctttagcctgtggc
tgttga
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