Xiphophorus hellerii (green swordtail): 116717070
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Entry
116717070 CDS
T07363
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116717070 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116717070 (smarcc1)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116717070 (smarcc1)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116717070 (smarcc1)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116717070 (smarcc1)
PBAF complex
116717070 (smarcc1)
GBAF(ncBAF) complex
116717070 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
116717070
NCBI-ProteinID:
XP_032414037
LinkDB
All DBs
Position
3:complement(5406786..5430065)
Genome browser
AA seq
1138 aa
AA seq
DB search
MATSATAAGGTGSGGGAAGLVGGGTAVARKKDGGPSTKFWESSETISQLETVRLWIGKHY
KKHVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPPLTKLPAKCFLDFKAGGTLCHILG
SVYKYKSEQGWRRFDLQNPSRMDRNVEMFLNVEKHLVQNNCLTRPLVYLSPEIEQKQVSK
LKDIIKRHQGSVTDDKSKATHHIHPSLTQQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTW
VSAGEVDGDVEDPPSSEKPWKVHAKWVLDTDAFNEWMNEEDYELDENKKPVSFRQKIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEDGVSKNANSKKDSENTPVKGGNMADLDDMEDDSVLSGGKDD
DEQGKGEVNRMDAGEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTP
EIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAESR
PLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPPQPMPNFADKSKDKAIDLQNFGLRPD
LYKKSAKQGKGAGTTREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRLP
IEDPYLESTETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRV
REEVPAELVEAHVKKVQEAARSTGKVDPTFGLESSGIAGTAPEEPEKTETAEPEKMETDS
DSQQADKAEMKDEAEKPSESAEKSDKTESTEKVKKEGAEGSEHEQEKEEEGETKTASADK
DKDETMDTSSSDQEKEKEEKTATEEGEEKQKKLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGSGPGPHPGPPPHGMHHGGPPPHHSGPPT
AHHGGPPPHHGGPPPHHGGPPPGAAMHPGFPPMGHHPMAPHHPGQTGPMEPGQPMPGRML
SAPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAIPPAPVAPPAPPSGRVSDN
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcggcgacagcagcaggcgggacgggctcaggcggaggagcggcgggtctg
gtcggcggcggaacggcggtagcccgaaagaaagacggcggtccttctacgaaattttgg
gaaagttcggaaacgatttctcagcttgagacggtgcgactttggatcggaaagcactac
aagaagcatgtccagaatgactctccatccagtaagtccctggctggcctggtggtccaa
ctgcttcagtttcaagaggatgcgtttggacgcagggtcaacaatcctcctcttaccaag
ctacctgccaaatgtttccttgatttcaaggcaggaggaactctctgtcacatcttggga
tcagtatacaagtataaaagtgagcagggctggaggagatttgacctgcagaatccgtct
cggatggaccggaatgtggaaatgttcctaaatgttgaaaaacacctggtccagaataac
tgcctgacacggcccctcgtctacctgtcgccagaaattgagcagaagcaggtcagcaaa
ctcaaagacatcatcaagaggcaccagggttcagtcactgatgacaagtcaaaggcaact
catcacattcacccatctttgacacagcaggaagacgaggagtggctgcgtcccgtcatg
aggaaggacaagcaggtccttgttcactggggcttctacccagacagttatgacacctgg
gtatccgctggtgaggtggatggtgatgtggaagatcctcccagctctgagaaaccctgg
aaggttcatgccaagtgggttttagacacagatgccttcaatgagtggatgaatgaggaa
gactatgagctggacgaaaacaaaaagcctgtcagcttccgacagaaaatcttccccaaa
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggcaaactctgctggcaag
aagaggagacgctcgccctcgccgcccagcactccagccgagtcccgaaaaaaaggagga
aagaaggggaacccagggcctcactggaagcgacggggacacagaggagaggaagaggac
actgaggaggacatgacgaaggacatggatgactcctctgccggcgccagcatggaggat
ggtgtgtccaagaatgctaattcaaaaaaagacagtgaaaatactccagtcaagggaggg
aatatggcagatttggatgacatggaggatgattcggtgctgtccggtggaaaggatgat
gatgaacaaggcaaaggagaagtcaatcggatggatgctggagaggacaatgtaactgag
cagactcatcacatcatcattcccagttatgctgcctggttcgactacaacagcatccat
gagattgagaggagagctcttccagagttctttaatgggaagaacaaatccaaaactcca
gaaatatatctggcctatcgtaacttcatgattgacacttatcggctgaaccctcaagag
tacctgacctccacttcctgtcgcagaaacctgactggggacgtctgtgccatcatgagg
gttcatgcattcctggaacagtggggtttggtaaattaccaggtggatgctgagagtcgg
ccattacccatgggcccccctcccacgccccacttcactgtgctggctgacactccctct
ggcctcattcccctcaaccaccggcctccacctattcctcctcctcagccaatgcccaac
tttgcagataagtccaaagacaaagcaattgacttgcagaactttggcctccgccctgac
ctctacaagaaaagcgccaaacagggaaagggagcaggtaccaccagagaatggactgag
caagagactctactactgcttgaggccctggaaatgtttaaagacgactggaacaaagtg
tcggagcatgttggttcacgcacccaagatgaatgtatcctgcacttcctgcggctgccc
attgaagatccttacctcgagagcacagaaacgtctctgggccctctggcctaccagccc
attcccttcagccagtccggaaacccagtaatgagcacagtcgccttcctggcctctgtg
gtggatcccagagtggcatctgctgcagccaaggcagctttagaggagttttctcgcgtg
cgtgaggaagttcctgctgagttggtggaagctcacgtcaagaaggtccaggaggcagca
aggagcaccggcaaggtggaccccaccttcggcctggagagcagcggcatcgcaggaacc
gcaccggaggagcccgaaaaaacagaaaccgcagaaccagaaaagatggaaacagattcg
gactcccaacaggctgataaggctgagatgaaggacgaggcggaaaagcccagtgagtcg
gcagagaaaagcgacaagacggagagcacggaaaaggtgaagaaggagggagcagaggga
tcagagcatgaacaggagaaggaggaagaaggagagaccaaaacagcttcagcagataaa
gataaggatgaaactatggacacctcatcttcagatcaagagaaggaaaaagaggagaag
acagctaccgaggagggagaggaaaagcagaagaagttggagcatgacattggagaggga
aacatcgctacagcggccgctgctgctctcgcttctgcagctaccaaagccaagcacttg
gcagcagttgaagaaaggaaaattaagtccctggttgctctgctggtggaaacccagatg
aagaagttggaaatcaagctgaggcacttcgaagagctggagaccatcatggaccgcgaa
aaggaagctctggagcttcagcggcagcagctcctcaccgagcgccaggcgttccacatg
gagcagctaaaatacgcagagatgaaggccagacaacagatggagcagcaagccgccgcc
gctgctgctgcagccgcccaggctcaaggtcagggctctggacctggaccgcaccccggt
ccccctccacacggtatgcatcacggcggacccccgccccaccacagcggccctcctact
gctcaccatggaggaccaccgccccaccatggcgggcctcctccccaccatggaggaccg
ccaccaggtgctgcaatgcatcctgggttccctccaatgggccaccatcccatggccccc
caccacccaggacagacaggaccgatggaaccgggtcagccgatgccaggacggatgctg
tccgctccgccttctgccggaccgccaccagggggcatgcctcccatgatgcccccacgt
caccctggagcccccaatggcatgtatcctggccccccacctgcacaaccagaggcgatt
cctccagctcctgtggctcctccagcgcccccaagtggccgggtgtctgacaattaa
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integrated database retrieval system
