Xiphophorus hellerii (green swordtail): 116717160
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Entry
116717160 CDS
T07363
Symbol
cic
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116717160 (cic)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116717160 (cic)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
DUF3915
Motif
Other DBs
NCBI-GeneID:
116717160
NCBI-ProteinID:
XP_032414206
LinkDB
All DBs
Position
3:complement(11977265..12023051)
Genome browser
AA seq
2738 aa
AA seq
DB search
MGPLKTNRRRSPPLTRGRGGKKRVGSHPVKEKDSKRVKKETLVRTTQHTPSTPSKRKYTP
TPTEANSDDEPITNSNTTTKEETTEQMKPVVSDTSDGKKPEEKTEKEKTVGTNGNSSPPT
DSVVLPTSAPTPLGIAAPPQATNHSPSLGSVSSRKTATFKARVPKKKYMYEHFANNASVT
NNIPISSPALISNSYGSINSKNSESVNTLNNIFKHSNNIPNSINKGTNVSINSSTSSITT
SGITSMTSSSNSCAGSQSTYINSINSRSNNCAGTQPSVLTVDSKATETNHFVSVKDKPLR
TSHSKEKDSLTGENELEGAPNSARSSSTDTASEHSSDLDVMEATGPNANIHILAPFQNSH
PKEVSLSEGLAEALAKGMKNQRVLARQRKRKMESDMKTANGKDSCLQSPVFRPGVVRRVS
GGSVEVQLQGEETLVKYPFCGRTMVTPSIEAESAVYFILDAPPPGISPVAVGTRVCVPFG
EEERSPLLYREGVVIQVDPHPGVSFPYQVLLNEDRETLGEKLVGEKEKGKVTGRVVWVSR
QSLRLLIPPWEVSQLDGGKAKERELEREREERERREEMEVEREVCQLSIGMGVLGGGARL
GPGFSHEGAAGVHTSGTVHSPASSSTVSSSVVAVTSHGCESNLSGRERQKQPNTPEEDVE
VSHFNMGNSIGPKANTGTSQYRNIVSKPSSYVPTSTHLSLVRGVGPPHLSTITSPLPTPS
PALLTPEISNTTPNLPLTKTTPTQTPTPTSGVGSSPGSSRSRTPLSLAQQKYKKGDVVCT
PNGIRKKFNGKQWRRLCSREGCMKESQRRGYCSRHLSMKTKEMEAAGGEKGGGGSSSGTV
TPSDLRGRASSEFEWDETSRESSETSSRGDSRPRLVLPSLLPHELSSRFDLDECEAATML
VSLGSSRSGTPSFSPISNQSPFSPAPSPSPSPLFGFRPATFSPITASPVLQHRRHRQPSG
TGGGGGGGSKPTTLTGAGERERHVSGVQPSFHSNLTFTVPMSPSKRKSDAPPPPPLPSHH
HDYTPKTELELGDLNNSFRVLSPQTPASHSRTHTPTLSQFKGLNTPSSSRPPSSAAASPP
PLLVSATPPSPLSTDGGLRRVVPIPQQTLRDSPVIVRNPEVPLVKFTESPLERGGGRNEA
AIDNTPPKDIALTPLTPQPVTGLQVPVPINAAAATVPNGTVYLRSPAQTLVLVSPTSSSL
PSTDPTATPLQALSVAVSTTVTASVLSSTDSSGERQDNKCTGFGGEVQQPVPCHPSPTAL
LPLILPAESLHPAPRKDIIMGRPGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDAPSHPSE
GQHPVNHPQATSLKTDCQGVAALSQEPAEAPPTVEKSPPSRPPPSSDEPLPEKEKGDVER
ERPDSETESDVDDPFLPGVVPEQPLSTSPVKRRTQSLSALPKDGDKSSPGKREKDHIRRP
MNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGAMEKKKYHDLAFQVKEAHFKA
HPDWKWCNKDRKKSSSEGRGVPGNKDIRERSMSESTEPHSVELKGVGPGLVGVSERSAGE
GHVGQLTRPRAFSQSAVHSLERGDRGNTQALAELAQMCVDSGGQFTSHAPAPSQAQRGVS
EDMTSDEERMVICEEEGDDDVIEDPYPSSSIDLKCKERVTDSDSENGSGDEGDRKRVFAP
VICSTASSSSSHHTPHGRSVSLSSFPSSRRYDEGRSGVVGFSDHRRKERSDGETKDTLVN
EGGSSMQASSLSISSAQPVKSTSSAGGPPSSSVGSLGASQALGIGAVRVASTVVTNVMRP
VISTPLPIASKPRDGGPSSSPHPPERKSLTPQQQPQILIGPGGGVGPPAGGGGCYTSSSP
NPVGAGGVVTNLVLGGALPAQSAVQLITPSPHPQPSHQHPLPCTAVSASHSQTNGPLPLL
QPQFLPGSPAPPPGAKAITQVQYILPTLPANTNPKSPPQNLSQPTSIFNLPTVPPTHVSL
ANGKQQGAGLQTGYAPSPAVGVVNPGARVQTQSPVLQGKMFVPMTTVRTAQAPAQQIPIV
TPPLPVQNGAQSGSKIIHLASMPVVQSQQPQGGAVHHASPFPVTVGATVVAPGSAPSQAV
LLPPAPTRITYVQSTPGVPSTLPLVSTTTGSSPTQQALPVPGSAYVPSPLATLGFTAIAP
PGQTLVQPLIAGQAPLLATAQSPQPSTTAPASGSGGQIVTAIYPPSPSVTMATGVVSMAP
VPPSVVYSVSNPSSASPHILPKHTTAPSTVMQLHLPPHPDRQADRHLPPDRSADRQSDRQ
PDRQVDILAHSDRQVERQNISYNSNSSAAPPSGSAASIRPSSPPLQIQAPGSTPKLLHLP
VRLPQKVKATVATIPVGSYDGGGRGKDRERDKEREKEREREREREKEREREAAANSHFSF
EPEPSGHMGSPAAHPSDEPPSSDTPLEGSSTADSSDPRNRESTTTKEGGWKETLPSSPLP
PPSATEPALPPPQTDKDGPTPKKIKARPPPLKKTFDSVDKTGRVLSEVYFEERFAELPEF
RPEEVLPSPTLQSLATSPRAILGSYRRKRKNSTDLDSAPDEQASPKRKSRRRSSCSSEPN
TPKSAAKCEGDIFTFDRAATDGEDILAELEFEKVPYSSLRRTLDQRRALVMQLFQEQGFF
PSAQATAAFQTRYSDIFPSKVCLQLKIREVRQKIMQTATPSDASILGPSESAASAPGPSG
SQVGEGAGKGGGDLHDEEVEQGADVSPEELRESQDSSR
NT seq
8217 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgttgaagacaaataggagacgatctccaccattaacaagaggcagaggagga
aaaaaacgagttggttctcatcccgtaaaagagaaagactccaaaagagtcaagaaggag
acgcttgtcagaaccacacagcacacacccagcactccttccaaacgcaaatacaccccg
acgcccacagaagccaactcagatgacgaaccgatcacaaacagcaatactaccactaag
gaggagactactgagcaaatgaaacctgtggtgtcagacacaagtgatggaaagaagcca
gaggaaaagactgaaaaggaaaaaacggtggggacaaatggaaacagttccccacccact
gattctgtagtattgcctacctctgccccaactccactcggcatagctgcacccccgcaa
gccaccaatcacagtcctagtttgggctcagtttccagtaggaagacggccacattcaaa
gcgcgcgtacccaagaaaaaatacatgtatgagcactttgctaacaatgcaagtgtcaca
aataatattcctatctccagccctgctctcatatctaacagctacggcagtatcaacagt
aaaaacagtgaaagtgtgaatactctcaataatatttttaagcatagtaacaatattcct
aacagcattaataaaggcactaatgtgagcataaatagcagtacttccagtatcactaca
agtggtattaccagtatgactagcagtagtaacagttgtgctggaagccaaagtacttat
ataaatagcattaatagcagaagtaataattgcgcaggtactcagccatcagtgttaaca
gtagacagtaaagctacagaaacaaaccattttgtctcagtgaaggataaacccctcagg
acatcacattccaaggaaaaagactcactaactggggaaaatgaattggagggtgcccct
aactcggcacgctcttcctctaccgatacagctagtgagcattcttctgacctggatgtg
atggaggcaacaggaccaaatgctaatatccacatccttgctcctttccaaaactcacac
cctaaagaggtcagtctttcagagggactagctgaagctctggctaaaggcatgaaaaac
cagagagttctggctcgccaacgaaaaagaaaaatggagagtgacatgaagactgccaac
ggtaaagattcctgcctccaatctcctgtgtttagaccaggggtggtgcgcagggtgagt
ggaggtagtgttgaagttcagctccaaggagaagaaacccttgttaaataccccttttgt
ggtaggactatggtgacaccctctatagaggctgagagtgctgtctacttcatcttagat
gcacccccacctggcatttcccccgtagctgttgggactcgagtgtgtgtcccatttggt
gaggaggaaaggagtcctctgttgtacagagagggggttgttattcaggtggacccccac
cctggtgtctcgtttccttaccaggtactcctaaacgaagacagagaaactctgggtgaa
aagttggtgggggagaaagaaaaaggcaaagtaacgggtcgggttgtctgggtgtcccga
cagagcctgagactactcatccctccgtgggaggtctcccagctagacggtggaaaagca
aaggagagagagcttgagagggaaagggaggagagagagcgccgggaggagatggaggta
gagagagaagtttgccagttaagtatcggcatgggggtgctgggaggtggagcacggctg
ggccctggattttcacatgagggcgctgcaggagtgcacacctctggaactgtgcattca
cctgccagttcctccactgtaagctccagtgtagtggccgtcacaagtcatggatgtgaa
agcaacttgtcgggcagagaaagacagaaacagcctaacacaccagaggaagatgtcgag
gtatctcattttaacatgggtaattccattggtccaaaagcaaacactggaacctcccag
tacagaaacattgtctccaagccgagtagttacgttcctacatccactcacctctcattg
gtgaggggtgtagggccacctcatctctctacaataactagtcctctgccaaccccatcc
cctgctttactgacccctgaaataagcaacaccactccaaacctacctctaaccaaaacc
actcccacccagacccctactcccacttctggtgtgggctcctctccgggctcctcccgt
tctaggactcctctctcgctggctcagcagaaatacaaaaaaggcgacgtggtgtgcact
cccaatggcatccgtaagaagttcaatgggaagcagtggaggaggttgtgctctagggag
ggctgtatgaaggagtctcagcgtcgaggatactgctctagacacttgtccatgaaaacc
aaagagatggaggcagcagggggggagaaaggagggggaggcagcagctcagggacggtg
accccttcagaccttcgggggagggcaagcagtgagtttgagtgggacgagacctcaaga
gagagcagtgagaccagcagcagaggagactccagacctcgtttggtccttccttccctc
ctcccccatgaactgtcgtcaaggtttgatttagatgagtgcgaggctgccaccatgctt
gtgtcgttaggaagctcccgctctggcactccctccttctcccctatctccaatcagtct
cccttctcccctgccccctctccctcaccctctccactgtttggtttcaggccggccacg
ttctcccctattactgcatccccagtcttacaacaccggcgacaccggcagcccagtggt
acagggggtggagggggagggggcagtaaaccaacaaccctaacaggagcaggtgaaagg
gagagacatgtttcgggtgtccagccctccttccacagtaacctgacgtttacggtcccc
atgagccccagcaaaagaaaatcagatgcacctcctccaccacctcttccctcacaccac
cacgattacacacccaaaacagagctggagctgggggacctcaacaactctttcagggtg
ctttcaccccaaacaccagcatcacattcccgcacacatacacccaccctctcccagttt
aaaggactgaacacaccttcttccagcaggcccccatcctctgctgctgcctctcctcct
cctctgctggtgtccgcaacccctccctctcccctctctactgacggagggcttcggcga
gtggtccctataccccagcagactttgcgggactcccctgtcattgttcgaaatcctgaa
gtcccattagtgaagttcacagagtctcccttagaaagaggaggaggaagaaacgaggca
gctatagataacaccccacctaaagacattgctttaaccccccttactcctcaacccgtc
acgggcctccaggttcctgtcccaattaatgctgctgcagcaacagtacccaacggtact
gtctacttgcggagcccagcccaaactctagtacttgtttccccgacatcttcctctcta
ccttccactgaccctactgccacccccctccaagccctctcggttgccgtaagcacaaca
gtgacagcttcagttctgagtagcacggacagctccggagaacgacaagacaacaagtgt
accgggtttggtggagaggtccagcagccggttccctgtcacccctctcccacagctctg
ctccctctgatcctaccagcggaaagtctgcaccctgcccctcgaaaggacatcatcatg
ggacgtcctggcacagtgtggaccaatgtagaaccacggtcagttccagtcttcccttgg
cattcattggttcctttcctggcacccacccaatcagatgctccgtctcatcctagtgag
ggtcagcaccctgtcaaccaccctcaagcaaccagtctaaagacagattgtcagggggtg
gcagcgctgtcacaggagcctgcagaggcacctcccactgtagagaaaagtcccccatcc
aggcctcccccttcgtctgatgagcctcttccagagaaggagaagggagatgtggagagg
gaaagacctgacagcgaaaccgagagtgatgtagatgaccccttcctcccaggagttgta
ccagagcagcctctctccacctccccagtaaagcgacgtactcagtctctcagtgcgttg
cccaaagatggagacaagagcagtccaggaaagagggagaaggatcacatccggcgacca
atgaatgcatttatgattttcagtaagcgtcatcgagcgttagtgcaccaacggcatcca
aaccaggacaacaggacagtcagcaagattcttggggagtggtggtatgccctgggagct
atggagaaaaagaagtaccatgacttggccttccaggtgaaagaggcccactttaaagca
cacccagactggaagtggtgcaacaaagacaggaagaagtccagctctgaaggtcgtggt
gtcccaggaaacaaggatatcagagaaagaagcatgtccgaatcaacagagccccattct
gtggagctcaagggtgtgggtccaggtctggtgggtgtgtcagagaggagcgcaggagag
gggcatgtgggtcagcttacccggcccagagccttttcccagagtgccgtgcacagcctg
gagaggggagacagggggaacactcaagctctggcagagctggcccagatgtgtgtggac
agcggtggccagtttaccagccatgctcctgcaccctctcaggctcaacggggggtcagt
gaggatatgaccagtgatgaagagcgtatggtcatctgtgaagaggaaggagatgatgat
gtcattgaggacccttatcccagcagctccatagacctaaagtgtaaggagcgtgtgacc
gacagcgatagtgagaatggttcaggagatgaaggggatcggaagagagtatttgcgccc
gtcatctgttccactgcatcatcgtcttcctcacaccatacccctcatggcaggagtgtc
tcactgtcctcttttcccagcagcagacgttatgatgagggcagatctggagtggtaggg
ttttcagaccacagaagaaaggaaagaagtgatggagagactaaagacactttagtgaac
gagggaggcagcagtatgcaggcctcttctctctccatctcttctgctcaaccggtcaaa
tcaacttcttcagctggagggcctccatcctcatcagtaggttccctaggagcgagccaa
gctctgggcattggtgctgtaagggttgcatctaccgtagtgacgaacgtgatgcgtccg
gtcatcagcacaccgctcccaatcgccagcaaacctagagatggcggcccgtcgtcaagc
ccgcatcctccagagaggaagtccctcactccccagcagcagccccaaattctgattggt
ccaggaggaggagttgggcctccagccggagggggtgggtgctacacttcatcatcacca
aaccctgtaggtgcgggtggtgtagtgactaacttagtgttaggaggggctctgcctgct
cagtctgctgtccagctcatcactccctcccctcaccctcagccgtcccatcagcatcct
cttccctgtacagccgtctctgcgtcacacagccaaaccaacggccccctgcccctcctc
cagccccagttcctccctggctcccccgcaccgccccccggggctaaggccatcacacaa
gttcagtacatcctgcccaccctccctgccaacaccaaccccaagagcccaccgcagaat
ctcagccagccaaccagtatcttcaacctacccacagttccaccaacacatgtgtccctg
gccaatgggaaacagcagggggccggtctgcaaacaggatacgctcccagccctgcagtg
ggcgtggtcaaccctggagcaagagtgcaaacccagtctccggtgctccagggtaaaatg
tttgttcctatgacaacagttcggactgcgcaagcccctgcccagcagattcccattgtc
actccaccccttcccgtccagaacggtgcacagtccggaagcaagattattcatcttgcc
tccatgccggtggtccagtcccagcagcctcagggtggagcagtgcatcatgccagcccc
ttcccagtaacagtgggcgcaacagtggtggcaccaggatctgccccctcccaggcggtg
ctgctgccgcctgcacctacaagaattacctatgtccagtccaccccgggggtcccatcc
actctgcctctagtctccacaacaacaggctcctcacccacccagcaagctctaccagtg
cctggatctgcttatgttccctcacctttagcaacccttgggtttacagccattgcacca
cctggacagacactggttcagccactgattgcaggtcaggcccctctgctcgccacagct
cagtccccacaaccctccaccaccgcccctgcctcaggttccgggggccagatagtcacc
gccatttaccctccatcaccaagcgtcaccatggcaacaggggtggtctctatggcgcca
gtgccccccagcgtggtctactctgtctctaacccttcgagcgcttctccccacatcctg
ccgaaacacacgactgccccctccaccgtcatgcagctccatctgccgccccacccggac
cgccaagcggacaggcacttgcccccggaccgatctgccgaccgtcagagcgacaggcag
cccgacaggcaggtggacatcctggcacactcagacagacaggtggagaggcagaacata
agctacaacagtaacagctcggcggcaccccctagtggctcagctgcgtccataaggccc
agcagtcctccacttcagatccaagcacccggcagtacacccaagttactacatcttcca
gtcaggctcccccagaaagtaaaagcaacggtggcaaccattcctgttggcagctatgac
ggaggaggccgagggaaagacagagaacgagacaaagagagggagaaggaaagggagaga
gaacgagagcgagagaaggagagggagagagaagcagcagccaacagtcatttctccttt
gagcctgagccttcagggcacatggggtctccggcagcacatcccagtgatgagccgccg
tcctccgacacacctctggagggttccagcaccgcggactcctctgacccaaggaacagg
gaaagcacaacaaccaaagagggtgggtggaaggagactctcccgtcctctcctctcccc
cctccgtcagccacagagcccgctttgcctcctccacagactgacaaagacggacctaca
cccaaaaagatcaaagcccgcccaccaccactaaagaaaaccttcgactctgtcgacaag
actggcagggttctctcagaggtatattttgaggagcggtttgccgagctgccggagttt
cgacccgaggaggttttgccgtcacccaccctgcagagtctggccacgtcacctcgcgcc
atcctgggcagctatcgtcgcaagaggaagaactcaacagatttggactctgcacctgat
gagcaagcctctccaaagaggaagagtcggcggcgttccagctgcagctctgaacccaac
acacctaaaagtgctgccaaatgtgaaggagacatcttcaccttcgacagagcagccaca
gatggagaggacattctggcagaactggagtttgaaaaggtgccgtattcgtccctgcga
cgaactcttgaccagaggagggcgctggtcatgcagctgttccaggagcagggcttcttt
ccgtcagctcaggccactgcagcattccagacaagatactccgacattttcccctccaag
gtgtgtctgcagctgaagatcagggaggtgcggcagaagatcatgcagacagcgacaccc
tctgatgcctccattttaggcccgtcagagtccgctgcatcggctccaggaccatccggc
tcccaggtgggggagggggctggcaaaggaggtggagacctgcatgatgaggaagtggaa
cagggagcagacgtgagtccagaggagcttcgtgagtcacaggactcttctagatga
DBGET
integrated database retrieval system
