KEGG   Xiphophorus hellerii (green swordtail): 116717479
Entry
116717479         CDS       T07363                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
xhe  Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xhe03400]
    116717479 (mdc1)
DNA repair and recombination proteins [BR:xhe03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    116717479 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 116717479
NCBI-ProteinID: XP_032414793
LinkDB
Position
3:complement(12535815..12551839)
AA seq 2107 aa
MDATQAISDSILESEEEDQEKIQNESRKPLAKLCILNNKHIPEKELPLFLGHNFLGRDPN
FCTIQLLAPSVSKQHAAISISVHRRRGRVHEVDMEALVWDQKSTNGTRKGRLKLTPNVRY
ALNEGDSLVLGDIPCRYVSSGMDSPSSLGDMETPRQSEANARLSDWDDVDTGSKKCVSRG
TKAKRIPVTGSCLSFEKTPVQPQGSLVPESDSESESEREGRGNRKQKDVVSASDSHNSAF
LSPQSKVISESEDESPITPSSSSRNGSSRRISFSLEKTDIDLEKNKSPVFAENGVEEGEG
ATEGGMYSEERGDNVKREADKSPTESSESLRSTLQVSRDAVPEFNLDSDTDVEGEEEEEE
EVPAGKSDQCPNTVLSHMDSDTDVDEDVSDKAPRTSPSTDEATKCSVTTGIQLEGITVDS
DTDVDDDDDANVTSKAVLPQGVHSADSAPSVQSVDFNLDSDTDVDEEEEVGKRGNPKTLS
EKSDKPLSPHNLHPDSHTCDKEVTAAGLDILSESDTDLEEDSLLSVPAAAADLPVSSAAA
AGAPEPESDADTDVDEPVAPQAADEGKPADLRMESDTDVEDVETSPGEEEQGQIPHLLRE
NTAEFPVLLWQNCSTPVHVSGEVEQMETQAFTSPISHPRRYAVPSSLRPALMTSCSDSQE
DEDYAVAETQSFILQTRSCHKGLNPNRASILKSSAVKQEDQSKRDDSFQLGLSDSSHLQG
EVRENTQAYATVDDGVNMEDTQDYEESAENDSSLEATQPYEVEPPRSSEISKKETCVDLT
MEATQAYIPEPYDEGSDEDEGLNSARTSVASSALAMAETQPMFSSAEDNEPDCSLEPVKN
GTERHVTDSESVAETQPMFTSDNEESGDEELSAESMKSAEELKHPRTSSALCLAETQPVC
LSDNEESGDDEELSAGSLRPSKVETHPNTDTVLSLAETQPLHVSADETEPMDSCGDYENN
SEILLPRKRKAKQLHIDEEESQQHTDSGETQPLTPGEDNDDSESMPSLRKRKAKPLQLED
ETQSLVGSQVSAVECQRSVTCEEEQSSQDFISTQKRKVKPLHIVNEQTQPLINCEDEDVL
PERESKALPLTSAGVPSAEVQTKGRDGKRDGDESVTYPRKRKEKRLHLEEEETQPVSASE
SQRKTDETKVSPSTKETGEQTKTKDDNNQQEVKVVNQKTRKRRTTRKQEEQDEDKNKRAE
NENQMKEQKGGKLRGEPEIHKREELMNEGTSKPHLEDNMQPVAASDSQRRIDGTKVSPST
EETGEQKKNKDESDQQEVKVVNQQTRGRTTRKQEQDEDKNKSQIKEQRDRKLGDEKETDR
HEKKELMNEGASKSQLEEETHPVTVSEISPPNTVKKPDVFDVSSISSSMETRLGEEEEKA
QCSSRQNRQTKSENKPLPSTRGQRGKTKSKDDNNHEEVKAANQRTRGRRSTKKQDDDEIQ
RSDEIKSQIKEEGDKEEREHVETERRNEREGKSKGKPRLKEMISGSEVEEEKGTSVETTK
TDQEHLARLEKEKQPKESQEDKNEEENPKGSARVRRAARRTTTAVCEALSEDVPARRTRS
RSNSFSSERSVSSINSNTLENKGRGRGAKKSSEASQTDAVRSSRRKTTTATAVEPDSVAQ
AVSASSKVSRGRPQGRGRKTLSQPDVVIKENEQKATEVLQQDEKRKADPKLAGTSRGQRR
ATANSSEALVLNDEGLQSNQEKTSADLTSPLPKRNMRDRGAKTVKTEPVEETEAPTATDG
DETRNKRKVKTSEEKSEVDRVQKSTEPGGKEEQQEEIPVGIQGRRTSRASSTQVKKNEES
LFTQEVKDGKKAVVGAAGKKARGRTTVVQKNKNQELQETQTSGSSMEPAGNEIESEISAM
TPSRKRRVSSNSSPVAKTPRSSSASPATVSRVRSRSQTYKVLFTGVVDKDGEQVLARLGG
AMARGISDMNCLVTDKVRRTVKFLCAVAKGVPVVTTQWLEKSGKAGSFLSPLDFIVKDLE
QEKKFSFSLQESLRTASSQPLLQGYEIHVTKSVQPEPVHMKDIITCSGATFLKKMPAAHK
PRTVVISCEEDLRLCGPAVSASLPVVTAEFILTGILQQRVDLQTHALSPCATNPHPAEGR
GRGRKKT
NT seq 6324 nt   +upstreamnt  +downstreamnt
atggatgcaactcaggcgatcagtgactcgatcttagagtcagaggaggaggaccaagag
aagatccaaaatgaaagcaggaagccattggccaaactgtgcatcttaaataataaacac
atccctgaaaaagagttgcccctcttcctgggacataatttcctgggtcgtgacccgaat
ttttgcacaatacagttgttggcaccatctgtgtccaagcagcatgctgccatcagcatc
tctgttcaccggagaagaggccgtgtccatgaagtggacatggaggccctggtttgggac
caaaagagtacgaatgggacacgtaagggacgcctaaagctgacccctaacgtgcgctat
gccctcaatgagggcgacagcttggttttgggggacatcccatgtcggtatgtgagctcc
gggatggactccccttcttcccttggtgacatggagacaccaagacaatcggaagcaaac
gccagattgtcagattgggacgacgttgacacaggaagcaagaaatgtgtcagtagaggc
acaaaagctaagaggattcctgtcacaggcagttgcctctcatttgagaaaactccagtc
cagccacaagggagcttggtgccagaatctgattctgagtcagagagcgaaagagaaggg
agaggaaacagaaaacagaaggatgttgtgtctgcttcagactcccacaattctgcattc
ttaagccctcaaagcaaagtcatttctgaaagtgaagatgaaagccccatcacaccatcc
tcctccagcagaaacgggtcaagcaggcgcatcagtttcagcttggagaagacggatatt
gacctggagaaaaacaagtcacctgtgtttgcggaaaatggtgtggaggaaggagaagga
gcaaccgaaggagggatgtattcagaagaaaggggagataatgtgaaaagggaagccgat
aaaagtcctacagaaagcagtgaatcactcaggtcgacgctacaggtctccagagacgcc
gtccctgaatttaacctggacagtgacacggatgtggagggagaagaggaagaggaagag
gaggtgcctgctgggaaaagtgatcaatgcccaaacacagtcctgtcacacatggacagt
gacactgatgttgatgaagatgtctcagataaagctccaagaacgtcaccttcaactgat
gaagcaacgaaatgttctgttactactggtattcagcttgagggcatcacagtggacagt
gacactgatgtggatgatgatgatgatgctaatgtcacatccaaagctgtgttacctcag
ggtgtgcacagcgctgactccgccccttcagtacagtctgtagatttcaacttggacagc
gacacagatgtggatgaggaagaggaggttgggaaacggggaaatcccaaaacactcagt
gaaaaatctgataaacctctgtctcctcacaatctgcatccagacagtcacacctgtgat
aaggaggtgactgcagctggtttggatattttgtccgaaagtgatacggacctggaagaa
gactctctcctctctgtccctgctgctgcagcagacctgcctgtgtcatctgctgcagca
gcaggagctcccgaaccagaatctgatgcagacacagatgttgatgaacctgttgctccc
caagccgcagatgagggcaaaccagctgaccttaggatggaaagtgatacagatgtggag
gatgtggagacaagtcctggagaggaagagcaggggcagatcccccacctgttgagagaa
aatactgcagagtttccggtccttctttggcagaactgttctactcctgttcatgtttca
ggagaagttgaacagatggaaactcaggccttcacaagccccatttcacatccacgtaga
tatgctgtaccttcctccttaagaccagcactaatgacttcttgctcagacagtcaggaa
gatgaagattatgctgtggctgagacccaatctttcattcttcagacaagaagttgccac
aaaggcttgaatccaaaccgagcctccattcttaagtcctctgctgtcaaacaagaggac
cagtccaaaagagatgattctttccagctgggactgtctgacagcagccatctgcagggc
gaggtcagggagaacacacaagcttacgccacagtcgatgatggagtaaacatggaggat
actcaggattatgaggaaagtgcagaaaatgactcgagcctggaggccacgcagccgtac
gaagtcgagcctcccagatcttcagaaatatctaaaaaagaaacctgtgttgacttgact
atggaggcaactcaggcttatatcccagaaccttatgatgaaggttcagatgaagatgag
ggactaaactctgccaggactagtgtggcttcatctgcacttgctatggctgaaacccag
ccaatgttctcttctgcggaggataatgagccagattgttccttagaacccgttaagaat
ggaacggagaggcacgtcaccgattctgaatcagtagcggaaacacagcccatgtttaca
agtgacaacgaggagagcggcgatgaagagttgtcagcggagtccatgaagtctgcagag
gagctgaaacatccacggacttcttcagccttatgcctcgctgaaacccaacccgtgtgt
ctgagcgacaatgaggagagcggcgacgacgaagagttgtcggcggggtccctgcgacct
tcaaaagtggagacacacccaaacactgatacagttttgtcgctagctgaaacccagccc
ctgcatgtcagcgctgatgaaactgagccgatggactcatgtggagattatgaaaataac
tccgagatccttcttccacgaaaaagaaaagcgaagcagcttcatattgatgaagaggag
tcgcagcagcacacagactctggtgaaacgcagcctttgactccaggtgaggataacgac
gattctgaatcaatgccaagcctgcggaaaaggaaagcaaagccgctgcagctggaagac
gagacacaatcactcgttggttctcaagtctctgcagttgaatgtcagcgttcggttaca
tgcgaggaagaacaaagcagccaagactttatctccacccaaaaaaggaaagtgaagccg
ctgcacattgtaaatgagcagacccagcctctgataaattgtgaagatgaagacgtccta
ccagaaagggagtcaaaagctcttcctctcacctctgctggagttccttctgctgaagtt
cagacaaaagggagggatggaaaaagggatggcgatgaatccgtcacatatccacggaaa
agaaaggagaaacggcttcatcttgaggaagaggagacgcagccggtctcagcttctgaa
tctcagagaaaaaccgatgagacgaaagtttcaccaagtaccaaagaaacaggagaacaa
acaaagactaaggatgacaacaatcagcaggaagtgaaggtggttaatcaaaaaacaaga
aagagaagaactacaagaaaacaggaagaacaagatgaggacaaaaacaagagagcagaa
aatgagaatcagatgaaggagcaaaaaggtgggaaactcagaggagaaccagaaatacac
aagagggaagagctgatgaatgaagggacatccaagcctcatcttgaggacaacatgcag
cctgtcgcagcttctgactctcagagaagaattgacgggacgaaagtttcaccaagtacc
gaagaaacaggagaacaaaaaaagaataaggatgagagcgaccagcaggaagtgaaggtg
gttaatcaacagacaagagggagaactacaagaaaacaagaacaagatgaggacaaaaac
aagagccagataaaggagcaaagagacagaaaacttggagacgaaaaagaaacagataga
cacgagaagaaagagctgatgaatgaaggggcatccaaatctcagcttgaagaagagacg
catccggtcacagtttctgaaatctctccaccgaatactgtaaaaaaacccgatgtgttt
gatgtatccagcatttcaagttcaatggaaactcgattaggagaagaggaagagaaggca
caatgttcttcacgtcaaaatagacagacgaagagtgaaaataaaccattaccaagcaca
agaggacagagaggaaaaaccaaatctaaggatgacaacaatcatgaagaggtgaaggcg
gctaatcaacggaccagagggagaagaagtacaaagaaacaggatgatgatgaaatacaa
aggagtgatgaaataaagagccagataaaggaagaaggagacaaagaagagagagaacat
gtggagacagagagacgcaatgagagggaaggaaaatcaaaaggaaaacccagattaaag
gagatgatatcaggaagtgaagtagaagaagaaaagggaacaagtgtggaaacaacaaag
acagaccaagaacaccttgcaagactggagaaagaaaaacaacccaaagaatcacaagaa
gacaagaacgaagaggagaaccccaaaggttctgcaagagttcgaagagcggcaagaaga
acaaccacagcggtgtgtgaagccttgagcgaggatgtaccagcaaggagaacccgatcc
cgctccaactccttcagctcagagcggtcggtctcctccatcaacagcaacaccctggag
aacaaagggagaggaagaggagcgaagaagagcagcgaagcctcccagacagatgctgtg
agaagcagccgccgaaagacgacgacggcgactgcagtggagccagactctgtagctcag
gcggtcagtgcgagctctaaggtctccagaggaagaccacaaggaagagggaggaagacc
ttgtctcagcccgatgttgtgattaaagaaaatgaacagaaagccactgaggttctgcag
caagatgagaaaagaaaagcagaccctaagcttgctggtaccagtagggggcagcggcga
gccactgccaattcttctgaagctttagttttaaatgatgagggccttcagtcaaatcag
gaaaaaacttctgctgatctaacatcccctctgcccaagagaaacatgagggacagaggt
gcaaaaactgtaaagaccgaacctgtagaggaaactgaggctcccacagcgactgatggt
gacgaaaccagaaacaagagaaaagtaaaaacaagtgaggaaaaatctgaagtggataga
gtccaaaaatcaacagaaccaggagggaaagaggagcaacaggaagagattcctgttggg
atacagggcaggagaacaagcagagcctcaagcactcaggtgaagaagaatgaagagtcg
ctctttacacaggaagtaaaagatggaaagaaggcggtggtgggggctgctgggaagaaa
gccaggggccgaacaaccgtggtccagaaaaataaaaaccaggagctgcaggaaactcag
acgtctggttcttccatggagccggctggaaacgagattgaatcagagatctcggccatg
actccttcccggaagcggcgggtttcctcaaactcctcccccgtggctaagacgccgcgt
tcctcctctgcgtctccagctacagttagccgagtacgatccaggagccaaacctacaag
gttctgttcacaggagtggtggataaagatggagagcaggttctggctcgtttaggaggc
gccatggccagaggtatctccgacatgaactgtctcgtgacagataaagtgcgaaggacg
gtcaaattcctgtgcgctgtggctaaaggtgtcccagtcgtcaccactcagtggctggaa
aagagcggtaaagctgggagcttcctctctccgcttgattttattgtgaaagatctggag
caggagaagaagttcagcttctccctgcaggagtctctgaggactgccagcagtcagcct
ctcctccagggatatgagatccacgtcacaaagtcggtacagccagaaccggttcacatg
aaagacatcatcacctgcagcggcgctaccttcctgaaaaagatgcccgcggctcacaag
cctcggaccgtagtgatttcctgtgaggaggacctgcggctgtgtggccccgccgtgtct
gcgtctctgcctgtcgtcactgctgagtttattctcacaggaatccttcagcagagagtc
gatttgcagactcatgcactttctccctgtgccaccaacccgcatcctgctgagggtaga
ggaagaggccgaaagaagacttag

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