Xiphophorus hellerii (green swordtail): 116717745
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Entry
116717745 CDS
T07363
Symbol
prdm1
Name
(RefSeq) PR domain zinc finger protein 1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xhe03000
]
116717745 (prdm1)
Transcription factors [BR:
xhe03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
116717745 (prdm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-met
zf-C2HE
B129_C2H2-zf
FOG1-like_PR
Phage_zn_bind_3
DUF7257
Zf-C2H2_ZNF451
Motif
Other DBs
NCBI-GeneID:
116717745
NCBI-ProteinID:
XP_032415222
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Position
3:complement(4421918..4436248)
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AA seq
842 aa
AA seq
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MCGWDQSYTATSHSSAMLTSEGAHTMEQDGTNHKMASTATSTGSDGAETMTDTDVDMDMD
MEEADMTHWAEAEFEEKCTYIVKDTPWEAGPDADFAMMTTRAEASLPRNLVLKHLAGTKE
VVGVCSREYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRIFADGEFHHFVDGLDETRSN
WMRYVNPAKSAAEQNLAACQNGMEIYFYTVKPVPAGAELLVWYCHDFARRLRYPPSGELM
MQKLKQSLMEVKQQHVDRDDSTVEMSSMSPVSMTPSPPKREHSVLSILRGTNSTSSSSAP
KREPSRPLPTRPRCADSPERPLQPRAVYPFLRPRYPLSEDLLKPSHPGYPLTHSPGKQFS
ATPSPSARSSPETSPHSSPSGPALSPASIYPYPGYSPPSAPLPSTFYPAQYPRYILPHYP
LPGGGVPTVGGIFPRIYPVYGSLMPRHLSLLPSDPAPRRLVIPEPVHPSSISAHRDYLLP
GPRSAFSTATLRDKAGVHSSYPGHPNPHGPAHAPSSGSPTAATAPPSEQVPTKPTSAHMG
NTSERHLDEEAINLTKVKRGAGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNLKVH
LRVHSGERPFKCQTCSKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLH
SGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCPHCHRHYIHLVSLRLHLKGYCLAA
TSGPGSPNVSSQAALEEVHRANEEIERFDVSEHAERLEQLQGSVEMDAMLEKQVLGMLWR
ESDLKSPNYHPTYNGTATDLLSAGYGAFESPNETSVIKIRRSTPISPVAASITVKQESED
HA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccaaagttacacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacactatggagcaggatggcacaaaccacaagatggcctccacagctacc
agcacaggttcggacggagcagagacgatgaccgacaccgacgtggacatggacatggac
atggaggaggcagacatgacgcattgggcagaggcagagtttgaggagaagtgcacatac
atcgtcaaagacacgccatgggaggcggggccagacgctgacttcgcaatgatgacgaca
agagcagaggcatcgctgcccagaaacctggtcctcaaacacctggcaggcaccaaagag
gtggtcggagtgtgtagccgggagtacattcccaaaggaacccgcttcggtcccctggtg
ggagagatctacacggctgacagcgtcccgaaagacgcaaaccggaagtacttctggagg
atctttgcggatggtgagtttcaccactttgtggacggtctggatgagacccgttccaac
tggatgcggtacgtcaacccggccaaatcggcggcagagcagaacctggcagcatgccag
aatggcatggagatttacttctacactgtgaagcccgtcccagccggcgccgagctgctc
gtctggtactgtcatgacttcgcccgccgcctgagatatccgccatcaggggagctgatg
atgcaaaaactcaagcagtcgcttatggaggtcaagcagcagcatgtggacagagacgac
agcacagttgaaatgtccagtatgtctccagtgtcaatgactcccagtcctcccaagagg
gagcacagtgtcttgtccattctccgtggcaccaacagcacctcgtcctcctcagctccc
aagagggagcccagccggcctcttcccacccgcccacgttgtgctgacagcccggagcgg
cccctgcaaccccgtgctgtctacccttttctcagaccacgttaccccctctctgaagac
ttactcaaacccagccaccctggttaccccttaactcattcccctggcaaacagttttcg
gccacaccaagcccttctgcaagaagcagcccagaaaccagccctcacagtagcccttct
ggtccagcattatcaccagcttctatttatccttaccctggttactcccctccatctgcc
ccacttccctcaacattctaccctgctcagtacccgcgttacatcctaccacattatcct
ctccctggcggtggtgtcccaactgtaggagggatattccctaggatctatccagtatat
ggcagcctaatgccccgtcatctatcccttctgccttctgaccctgcaccaaggcgcctt
gtaatacctgaacctgtgcacccctcctcaatctctgcccacagagactatctcctgcct
gggccaagaagtgccttctcaacagctactttgagagacaaagcaggagttcacagctct
tatccagggcatcctaacccacacggaccagctcacgctccctccagcggctccccaact
gccgccacagcacctcccagcgagcaggtgccaaccaagcctacctcagcccatatggga
aacactagtgaacgtcacttagatgaagaggctattaatctgaccaaagtgaagcgtggt
gcagggtcagcaggatataaggccttgccttaccctctgaagaagcagaatggcaaaatc
aagtatgagtgcaacgtgtgcagtaagacctttgggcagctgtcaaacctaaaggttcat
cttcgggtgcacagcggagaaaggccattcaaatgtcaaacctgtagcaaaggtttcact
caactcgctcatctgcaaaaacactacctggttcacactggggagaaaccacatgaatgt
caggtttgtcacaagcgcttcagcagcaccagcaacctgaaaactcacctacgccttcac
tcaggggagaagccttatcactgcaagctctgccctgctaagttcacccagtttgtccac
ctcaagctgcacaagcgcttgcactcccgcgaacgtccacataaatgcccccactgccac
cgccactacatccacctggttagcctgcggctacacctgaaaggctactgcctggctgca
acctctggtccaggcagtcctaatgtctcaagtcaagctgccttggaagaggtgcaccgc
gccaacgaagagattgagcgcttcgacgtcagtgagcacgctgagcgactggagcagctg
caggggtcagtggagatggacgccatgttggagaaacaagtcttggggatgctgtggagg
gagtctgaccttaagtcccccaactaccatccgacttacaatggcactgccaccgatctt
ctgtctgcaggttatggtgcattcgagtccccgaacgagacgtcggttatcaagatccgc
cgcagcacccccatctcaccagttgctgctagcattaccgtcaagcaggagtcagaggat
catgcttga
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