Xiphophorus hellerii (green swordtail): 116717779
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Entry
116717779 CDS
T07363
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116717779
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
116717779
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GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
RuvA_C
Motif
Other DBs
NCBI-GeneID:
116717779
NCBI-ProteinID:
XP_032415273
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Position
3:complement(8574678..8582990)
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AA seq
624 aa
AA seq
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MDPVLPSDVFDSDLLETESEELRLKVDFFRKLGYSTAEVKAALRKLGLSTDTNAMLEELV
RNRTTNTSPCFSESDERSADLKDLLLPPSWDVGTCRIMPQLGEQKSADSELRPIVIDGSN
VAMSHSNKEVFSCRGIELAVDFFLDRGHNNITVFVPSWRKELPRADAPITDQHILLELEK
RKIVAFTPSRRVGGKRVVCYDDRFIVKLAHDLDGIIVSNDTYRDLQGEKPEWKKCIEERL
LMYSFVNDKFMPPDDPLGRHGPNLDNFLRKKPLPVEQKKLPCPYDKKCTYGIKCKYYHPE
RANHSYLSLADELREKAQISFVKEEKKARSSVNYPQSEPEPSHPRHTHLPWDQQISSVLG
HISENKLLLWENSRKSPNQMLSSTNGGKCQEEYPASHYIPNHYPNMSREYFDSGFGSTES
YYSDLPPSRSSTHRLGSQHQSTLPRLQHSPVHMENCNTSYCGKCYSYPQQQHHSNIDCCS
LPIYDTYNPNMFPHGVHQQRSLPAHFHNTATPQLHHNYWSDPFQGMPPARSSCPTPSLAY
PSHCHSSCCSYENHQYQTWGQQQQPPLPPAPAAFKQNRSEMRKKLHAIFNPNQVDRVMEM
FPHLMDAEVLAAEILNMKAQGMIF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggacccggtacttcccagtgatgtttttgactcagatctgctggagacagaaagtgag
gaactccggcttaaagtggacttcttcagaaaactggggtactccacagcagaggtgaaa
gccgctctgagaaagctgggcctaagcacagacaccaacgcaatgctcgaggagcttgtg
agaaacagaaccaccaacacgtcaccctgtttttccgagagcgatgagaggagcgcagat
ctgaaagacctgctgctgcctcccagttgggacgttggaacctgcagaatcatgccacaa
ctcggggagcaaaaaagtgcagactcggagctgagacctattgttattgacggcagcaat
gttgctatgagtcacagcaacaaggaagtgttctcatgcaggggcatagagttggcagtg
gatttcttcctggacagaggtcataataacatcactgtgtttgttccctcttggcgcaaa
gagttgccccgagctgatgcccctataacagatcaacatattctgttggagcttgaaaaa
cggaaaatagtggccttcaccccttcccgccgggttggtggcaagcgagtggtttgttat
gatgaccgcttcattgtcaaactggcgcatgatttagatggcataattgtgtccaacgac
acctaccgtgatcttcaaggagaaaaacctgagtggaagaaatgcattgaggagaggctc
ctcatgtactcatttgtgaatgacaagttcatgcctccagatgatcctttaggtcgacat
ggacctaacctcgacaattttctccggaaaaagcccctgcctgttgagcagaaaaaactg
ccctgtccatatgataaaaagtgcacttatggcatcaagtgcaagtactaccatcctgag
cgggcaaaccactcctatctgtccttggctgatgaactgagagagaaagcacaaatttct
tttgtaaaagaagagaaaaaggcaagatcatctgtcaactatcctcaatctgaacctgag
ccttctcatcctcgacacacacatctcccttgggatcagcagatttcctcagttcttggt
cacattagtgaaaataaactactgctctgggaaaactccagaaaaagccccaaccaaatg
ctgtcttcaacaaatggaggaaagtgtcaagaagaatatcccgcgtcacactacatacca
aatcattatcccaatatgtctcgggaatattttgattccggttttggttcgactgagagc
tactactccgacttgccaccatcccgcagcagcacccacagacttggttctcagcatcaa
agcaccctccccaggctccaacattccccagttcacatggagaactgtaataccagttat
tgtggcaaatgctattcctatcctcagcagcagcatcatagcaacatcgactgctgcagt
ctacccatctatgacacctacaatccaaatatgttcccacacggtgtacatcaacaacgg
agcctgcctgcccatttccataacactgcaaccccccaactccatcataattactggtca
gatccctttcagggaatgccgccagccagatcctcatgccccaccccctccttggcttat
ccttcacattgccacagctcctgttgctcctatgagaatcaccagtaccaaacctggggc
caacaacaacaaccgccgctgcctccggctcctgctgcattcaagcaaaatagatcagaa
atgcgcaagaaactgcatgccatcttcaacccaaaccaagtggatagggtcatggagatg
ttcccgcacctgatggatgctgaagttttggctgcagagatactgaacatgaaagctcag
gggatgatattctga
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