KEGG   Xiphophorus hellerii (green swordtail): 116717779
Entry
116717779         CDS       T07363                                 
Name
(RefSeq) endoribonuclease ZC3H12A-like
  KO
K18668  ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xhe  Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xhe03019]
    116717779
Messenger RNA biogenesis [BR:xhe03019]
 Eukaryotic type
  mRNA degradation factors
   Other degradation factors
    RNases
     116717779
SSDB
Motif
Pfam: RNase_Zc3h12a UBA_6 Regnase_1_C zf-CCCH_2 RuvA_C
Other DBs
NCBI-GeneID: 116717779
NCBI-ProteinID: XP_032415273
LinkDB
Position
3:complement(8574678..8582990)
AA seq 624 aa
MDPVLPSDVFDSDLLETESEELRLKVDFFRKLGYSTAEVKAALRKLGLSTDTNAMLEELV
RNRTTNTSPCFSESDERSADLKDLLLPPSWDVGTCRIMPQLGEQKSADSELRPIVIDGSN
VAMSHSNKEVFSCRGIELAVDFFLDRGHNNITVFVPSWRKELPRADAPITDQHILLELEK
RKIVAFTPSRRVGGKRVVCYDDRFIVKLAHDLDGIIVSNDTYRDLQGEKPEWKKCIEERL
LMYSFVNDKFMPPDDPLGRHGPNLDNFLRKKPLPVEQKKLPCPYDKKCTYGIKCKYYHPE
RANHSYLSLADELREKAQISFVKEEKKARSSVNYPQSEPEPSHPRHTHLPWDQQISSVLG
HISENKLLLWENSRKSPNQMLSSTNGGKCQEEYPASHYIPNHYPNMSREYFDSGFGSTES
YYSDLPPSRSSTHRLGSQHQSTLPRLQHSPVHMENCNTSYCGKCYSYPQQQHHSNIDCCS
LPIYDTYNPNMFPHGVHQQRSLPAHFHNTATPQLHHNYWSDPFQGMPPARSSCPTPSLAY
PSHCHSSCCSYENHQYQTWGQQQQPPLPPAPAAFKQNRSEMRKKLHAIFNPNQVDRVMEM
FPHLMDAEVLAAEILNMKAQGMIF
NT seq 1875 nt   +upstreamnt  +downstreamnt
atggacccggtacttcccagtgatgtttttgactcagatctgctggagacagaaagtgag
gaactccggcttaaagtggacttcttcagaaaactggggtactccacagcagaggtgaaa
gccgctctgagaaagctgggcctaagcacagacaccaacgcaatgctcgaggagcttgtg
agaaacagaaccaccaacacgtcaccctgtttttccgagagcgatgagaggagcgcagat
ctgaaagacctgctgctgcctcccagttgggacgttggaacctgcagaatcatgccacaa
ctcggggagcaaaaaagtgcagactcggagctgagacctattgttattgacggcagcaat
gttgctatgagtcacagcaacaaggaagtgttctcatgcaggggcatagagttggcagtg
gatttcttcctggacagaggtcataataacatcactgtgtttgttccctcttggcgcaaa
gagttgccccgagctgatgcccctataacagatcaacatattctgttggagcttgaaaaa
cggaaaatagtggccttcaccccttcccgccgggttggtggcaagcgagtggtttgttat
gatgaccgcttcattgtcaaactggcgcatgatttagatggcataattgtgtccaacgac
acctaccgtgatcttcaaggagaaaaacctgagtggaagaaatgcattgaggagaggctc
ctcatgtactcatttgtgaatgacaagttcatgcctccagatgatcctttaggtcgacat
ggacctaacctcgacaattttctccggaaaaagcccctgcctgttgagcagaaaaaactg
ccctgtccatatgataaaaagtgcacttatggcatcaagtgcaagtactaccatcctgag
cgggcaaaccactcctatctgtccttggctgatgaactgagagagaaagcacaaatttct
tttgtaaaagaagagaaaaaggcaagatcatctgtcaactatcctcaatctgaacctgag
ccttctcatcctcgacacacacatctcccttgggatcagcagatttcctcagttcttggt
cacattagtgaaaataaactactgctctgggaaaactccagaaaaagccccaaccaaatg
ctgtcttcaacaaatggaggaaagtgtcaagaagaatatcccgcgtcacactacatacca
aatcattatcccaatatgtctcgggaatattttgattccggttttggttcgactgagagc
tactactccgacttgccaccatcccgcagcagcacccacagacttggttctcagcatcaa
agcaccctccccaggctccaacattccccagttcacatggagaactgtaataccagttat
tgtggcaaatgctattcctatcctcagcagcagcatcatagcaacatcgactgctgcagt
ctacccatctatgacacctacaatccaaatatgttcccacacggtgtacatcaacaacgg
agcctgcctgcccatttccataacactgcaaccccccaactccatcataattactggtca
gatccctttcagggaatgccgccagccagatcctcatgccccaccccctccttggcttat
ccttcacattgccacagctcctgttgctcctatgagaatcaccagtaccaaacctggggc
caacaacaacaaccgccgctgcctccggctcctgctgcattcaagcaaaatagatcagaa
atgcgcaagaaactgcatgccatcttcaacccaaaccaagtggatagggtcatggagatg
ttcccgcacctgatggatgctgaagttttggctgcagagatactgaacatgaaagctcag
gggatgatattctga

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