Xiphophorus hellerii (green swordtail): 116718078
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Entry
116718078 CDS
T07363
Symbol
myo5a
Name
(RefSeq) unconventional myosin-Va isoform X1
KO
K10357
myosin V
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
116718078 (myo5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116718078 (myo5a)
04131 Membrane trafficking [BR:
xhe04131
]
116718078 (myo5a)
03029 Mitochondrial biogenesis [BR:
xhe03029
]
116718078 (myo5a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xhe04812
]
116718078 (myo5a)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
116718078 (myo5a)
mRNA cycle factors
P-body specific factors
116718078 (myo5a)
Membrane trafficking [BR:
xhe04131
]
Others
Actin-binding proteins
Myosins
116718078 (myo5a)
Mitochondrial biogenesis [BR:
xhe03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
116718078 (myo5a)
Cytoskeleton proteins [BR:
xhe04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
116718078 (myo5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_22
nSTAND3
AAA_16
HTH_17
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
116718078
NCBI-ProteinID:
XP_032415617
LinkDB
All DBs
Position
4:27841084..27908517
Genome browser
AA seq
1850 aa
AA seq
DB search
MNRELEYMFVQSARVWIPDAEEVWKSAELTKDYKNDDASLQLMLEDGTTIDHKLDPKTKN
LPYLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYETLPI
YGTDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR
YFATVSGSASEANVEEKVLASNPIMEAIGNAKTTRNDNSSRFGKYIEIGFDNRYRIIGAN
MRTYLLEKSRVVFQADEERNYHIFYQLCASANQPEFKNLRLSTANDFLYTRQGRSPVIEG
VDDAKELRTTRHAFTLLGINESYQIGLFQVLAAILHLGNVEIKDRDSDSSLIAPNNRHLT
AFCELVGVTYQDMSQWLCHRKLKTATETYIKPLPRLQATNARDALSKHIYAKLFNWIVEH
VNKALVTNIKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYM
KEQIPWTLIDFYDNQPCINLIEAKMGILDLLDEECKMPKGSDDSWAQKLYNTHLKTCSLF
EKPRMSNRAFIIQHFADKVEYQCEGFLEKNKDTVNEEQIHVLKASKKFNLLVELFQDEEK
ATTPTGQVPGTGGRTRLSIKPDKGRDTSSKEHKKTVGCQFRNSLQMLMETLNATTPHYVR
CIKPNDFKLAFSFDPKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDV
LPDKKLTCKNVLEKLVQDQDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRC
WLARKKYLRQRSAAITIQRFTRGYQARCLAKFMRRTQAATIIQKYQRMCVERKRFRQKQA
AALAMQTILRAYMARQKYQALLREHKAVIIQKHVRGWLARCWYKRCLEAIVYLQCCIRRM
RAKRELKKLKIEARSVEHFKKLNKGMENKIMQLQRKIDEQNKDNRVISERLVSLESSYAS
ESERMRGELGRLRGVEEDAKNKANQVSSLLEELEKLRKELSVTQQEKKTIEDWAQKYRDE
MEKMVSELKDQNGLLKKEKDDLNRMIQEQSQQMTEKMTRAIAQETQQLETDLNEERSRYQ
NLLTEHLRLEEKYDDLKEELAHSKNVSKPGHRRTDSTHSSNESEYTYNSEYAELEDGSRV
GEDVTRGMDTSLTLKLQKRVTELEQEKQSLRNELENKEEQFQRARARDDAQFRKARGAEL
EYESLKRQELESENKKLRHDLAEMRQSLLGGAAASAGAPGSPAYKVLLDQLNASCEELEV
RKEEVLILRSQLVSQKEAMHHKDEKETMTEPSVFAQDVNKLKDADELKQAYVGLKDTNRL
LEQQLQTQRRTYDSEVESLRGELQNVKEENNRQQQLLAQNLQLPPEARIEASLQHEITRL
TNENLELMADDPTASREARVIILRRMVDLMEQLEKQDRTIRKLKKQLKVYSKRIGEMGAG
HTEGQTSPGQMVEEPIHPVNIPRREKDFQGMLEYKKEDEMKLVKNLILELKPRGVAVNLI
PGLPAYILFMCLRHSDYVNDDQKVRTLLTSTINSIKKILKKRGDDFETVSFWLANTCRFL
HCLKQYSGDEVFMKHNTSRQNEHCLSNFDLAEYRQVISDLAIQIYQQLVKCMENILQPMI
VSGMLEHETIQGVSGVKPTGLRKRTSSIADEGTYTLDSILRQLSAFHSTMCQHGTDPELI
KQVVKQLFYIIGAVTLNNLLLRKDMCSWSKGMQIRYNVSQLEEWLRDKGLMNCGAKETLE
PLIQAAQLLQVKKKTDEDAEAICSMCHALTTAQIVKVLNLYTPVNEFEERVSVSFIRTIQ
TRLRDRCESPQLLMDTKMIYPVTFPFNPSSLALETIQIPTSLNLSFLTRV
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgggagctggagtatatgttcgttcaatctgctcgggtttggatccccgacgcg
gaggaggtgtggaagtctgccgagctcaccaaggactacaaaaatgacgacgcctcgctt
cagctcatgctggaggatggaacgaccattgatcacaagctggaccccaagacgaagaac
ctgccttacctgcggaacccggacatcctggtgggcgagaacgacctcactgccctcagc
tacctccacgagcccgccgtgctccacaaccttaaagtccgcttcatcgactcaaagctc
atctacacctactgcggaatcgttctcgtggccatcaacccgtacgagacgttgccgatc
tatggaacagacataatcaacgcctacagcgggcagaacatgggagacatggacccacat
atctttgccgtggcagaggaggcttacaagcagatggcaagagatgagagaaaccagtct
attatcgtgagtggagagtcgggagcaggaaagactgtctcagccaaatatgccatgcgg
tactttgctacagtcagtggttctgccagcgaggccaacgtagaagagaaggttttggct
tccaaccccatcatggaggccatcggaaacgcaaagaccacccggaatgacaacagcagc
cgctttggcaaatacatcgagatcggcttcgacaatcgatatcgcatcatcggggccaac
atgagaacatatctgcttgagaaatccagagtggtgttccaggcggacgaggagaggaat
taccatatcttctatcaactctgtgcatcagctaatcagcctgagttcaagaatctgagg
ctaagcaccgcaaacgacttcctctacaccaggcagggccgcagtcccgtcatcgaaggt
gtagacgacgccaaagagcttcgcaccactcgccacgccttcacacttctgggtataaac
gagtcgtatcagatcggcctgttccaggtcttggctgctattcttcaccttggaaacgtg
gagataaaagacagagactcagacagcagccttattgctcccaacaatcgtcacctgacg
gcgttctgtgagctggtgggcgtgacctatcaggacatgtcccagtggctgtgccacagg
aagctgaagacggccacagagacctacatcaagcccctcccccggcttcaggccaccaac
gctcgcgacgctctgtccaaacatatctatgccaagctgttcaactggatcgtagagcat
gtgaacaaggctctggtcaccaacatcaagcaacactccttcattggagtcctggacatc
tatgggtttgaaacgtttgaaatcaacagctttgagcagttctgcatcaactacgcaaat
gaaaaactgcagcaacagttcaacatgcacgtgttcaagctagagcaggaggagtacatg
aaggagcagatcccctggactttgatcgacttctatgacaatcagccctgcatcaacctc
atagaagctaaaatgggcatcctggacctgctggacgaggagtgcaagatgccgaaaggt
tctgatgactcctgggctcagaagctgtacaacacccacctgaagacttgttccctgttc
gagaagccgcgcatgtccaaccgcgccttcatcatccaacattttgctgataaggttgag
tatcagtgtgagggtttcctggagaagaacaaggacacagtgaacgaagagcagatccat
gtgctgaaggccagcaagaagttcaacctgctggtggagctgttccaagatgaggagaag
gcgaccacccccaccggtcaggtgcccggtaccgggggccggacccgcctcagcatcaaa
ccggacaagggccgggacaccagcagcaaggagcacaagaagacagtgggctgtcagttt
cgtaactccctccaaatgttgatggagactctgaatgccaccactccacactacgtccgc
tgcattaaacccaacgacttcaagctggccttctcgtttgatccaaagcgagcagtgcag
cagcttagagcttgtggcgttctggaaaccatccgcatatctgcggccggcttcccgtcc
agatggacgtaccaggagttcttcagtcgctacagagtgctgatgaagcagaaagatgta
ctccctgacaagaagctgacctgcaagaatgttctggagaaattagtacaggaccaggat
aagtatcagttcggtaagactaagatcttcttcagggccggccaggtggcgtacctggaa
aagctgagagccgacaagctgcgtgccgcctgcatccgcatccagaagaccatccgctgc
tggctggcacgcaagaagtacctgcgccagcgcagcgccgccatcaccattcagaggttc
accaggggataccaggcccgctgtttggcgaagttcatgcggcgcactcaggcggccacc
atcatccagaagtaccagaggatgtgtgtggagcggaaacgcttcaggcagaagcaggct
gctgcgctggccatgcagaccatcctcagagcctacatggcccggcagaagtaccaggcg
ctgctgcgagagcacaaggcggtcatcattcagaagcacgtccgcggctggttggcccgc
tgctggtacaagcgctgcctcgaggccatcgtctacctgcagtgctgcatccgcaggatg
agagccaagcgggagctgaagaagctgaaaatcgaggctcgctcggtggagcacttcaag
aagctcaacaaaggcatggaaaacaaaatcatgcagctgcagaggaagatcgacgagcag
aacaaggacaaccgggtgatcagcgagagactggtctctctggagagttcgtacgcctcc
gagagcgagcgcatgcgcggcgagctgggccggctgcgaggggtggaggaagacgccaag
aacaaagccaaccaggtgtcgtctctgctggaggagctggagaagctgaggaaggagctg
agcgtcacgcagcaggagaagaagaccatcgaggactgggcgcaaaagtacagggacgaa
atggaaaagatggtttccgagctgaaggaccagaacggcctgctgaagaaagagaaagac
gacctgaaccggatgatccaggaacagagtcagcagatgacagagaaaatgactcgcgcg
atcgcgcaggagacccagcagctggagacggatctgaacgaggagcgctcccgctaccag
aacctgctgaccgaacacctgcgcctggaggagaaatacgacgacctgaaggaagagctg
gctcactccaagaacgtctccaaaccgggccacaggagaacagactccacccacagcagc
aacgagtcggagtacacgtacaactcggagtacgccgaattagaagacggttcccgcgtt
ggcgaagacgttacacggggaatggacacctcgctgaccctgaagctgcagaaacgcgtt
acggagctggagcaggagaagcagtcgctgcgcaacgaactggagaacaaagaggagcag
ttccagcgggctagagccagggatgatgcacagttcaggaaggctcgcggtgcagagctg
gagtacgagtccctgaagcgtcaggagctggagtcggagaacaagaagctgaggcacgac
ctggccgagatgaggcagagcctgctgggcggtgcggccgcaagcgccggcgcgccgggc
tcgcccgcctacaaggtgctcctggaccagctcaacgcttcctgtgaggagctggaggtc
cgcaaggaagaggtgctgatcctgcggtcccagctggtcagccagaaagaggccatgcac
cacaaggatgagaaggaaaccatgacggagccttcggtgtttgctcaggatgtgaacaaa
ctgaaagacgccgatgagttgaagcaagcctacgttggcctcaaagacaccaacaggttg
ctggagcagcagctgcagacccagcggaggacgtacgacagcgaggtggagtcgctgcgc
ggcgagctgcagaacgtgaaggaggagaacaaccggcagcagcagctgctggcccagaac
ctgcagctgcctcccgaggcccggatcgaagccagcctgcagcacgagatcacccggctc
accaacgagaacctggaactcatggccgacgatcccacagcgtccagagaggctcgagtc
atcatattacggcggatggttgatctgatggagcagctggagaagcaggacagaaccatc
cggaagctgaagaagcagctgaaggtttactccaagaggatcggagagatgggggcgggt
cacaccgagggacagacgtctccgggacagatggtggaggagcccatccacccggtcaac
atcccccgcagggagaaagacttccagggaatgctggagtacaagaaggaggatgagatg
aagctggttaagaatctcattctggagctgaagcctcgcggcgtagccgtgaatctgatc
ccaggtctgccggcctacatcctgttcatgtgtctgagacactcggactacgtcaacgac
gaccagaaagttcggactctgctcacgtcgaccatcaacagcatcaagaagatcctcaag
aaacgaggcgatgactttgagacggtctcgttctggttggccaacacctgccgcttcctg
cactgtctgaaacaatacagcggagatgaggtctttatgaagcacaatacatccaggcag
aatgagcactgcctgtccaactttgacctggcagagtacagacaggtgatcagtgacctg
gccatccagatctaccagcagctggtcaaatgcatggagaacatcctgcagccaatgata
gtgtctgggatgctggagcatgagaccatccagggcgtgtccggagtgaagcccacgggt
ctccgcaagcggacgtccagcatcgccgacgaggggacctacaccctggactccatcctg
cggcagctcagcgccttccactccaccatgtgccagcacggcaccgaccccgagctcatc
aagcaggtggtgaagcagctcttctacatcatcggagccgtcacgctcaacaacctgctg
ctgcgcaaggacatgtgctcctggagcaaaggcatgcagatcaggtacaatgtgagccag
ctggaggagtggctaagagacaaagggctgatgaactgtggagccaaagagaccctggag
cctctgatccaggccgcccagctgctgcaagtgaagaagaagacggacgaagacgccgag
gccatctgctccatgtgccacgctctcaccaccgctcagatcgtaaaggtcctgaacctc
tacactccggtcaacgagttcgaggagagagtttccgtttctttcatacgaaccatacag
acccgcttgcgagaccgctgcgagagtccccagctgttaatggacaccaaaatgatctac
ccggtcaccttcccgttcaacccgtcctccctcgccctggaaacgatccagattcccacc
tccctgaacctgagcttcctcaccagggtctga
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integrated database retrieval system
