Xiphophorus hellerii (green swordtail): 116718150
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Entry
116718150 CDS
T07363
Symbol
strc
Name
(RefSeq) stereocilin
KO
K24636
stereocilin
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xhe03037
]
116718150 (strc)
Cilium and associated proteins [BR:
xhe03037
]
Other cilia and associated proteins
Stereociliary proteins
116718150 (strc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Stereocilin
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
116718150
NCBI-ProteinID:
XP_032415734
LinkDB
All DBs
Position
4:complement(15597115..15617011)
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AA seq
1947 aa
AA seq
DB search
MTMVKKGSGMAAFKFTTIIVCAVLVGQRTGGEKVDHRDALLKEIVSKWSKEAGLRPPPET
NKDQSLPSWVRSIMGGLKTFFPSKNLPSLNKPIDRRRLSGFLYNISLYLQEMGAELEDVP
AEQDEDQLWEKVLHFFLQSEGNAALNQWNGHVPPRPSVKVQDWFLSLRGSPHWDWLLGLL
QSLITLSERQPQRPILAFLSQNWRTVSAVLEATLQAVISGTYGQASAGLQGFICALKGRS
DCAFSVSWLQQLLQFLETRNWKPVVSLHPAGEPVGHGKGPSAFGRFKPFSLPPEAMLRQD
RFSANASAENMMSIEDELDSVQSFLLQALSRSGGGDRGGQQAQKNLALVQSLDGLRRGLL
HRVGSSVYGSLREKVSRVTMAILDDVSSLVEVPQPNFQGRCSVGNLRQLILWGIRHNVTW
NAQALGASSQGLPSSLPFLSCPSTQEGKLQSPPLPAQSSKKTLSSQKPFKQTQSHKPSAA
GPRQFTESNRKQKQMEFFTSTEILEAACNDSIPGLTGVSNFTVFLYCKLFEGENGSGNPA
ATHLGLDLHATCSDAAWYLSAVEEDFFWVHVCTEFFAHEFNNTVCANSSFWLQKAQQAAA
LQDYHFFNHTSIDDLCVQLSRDAALNPELSENCLAQLGSKSLNAEAFRNCFLPNNSVLIS
ALCGRDSPGSQQSLPEGSWAAAYCSKIDNLTFDDTFREPCQYREWTVEKFTNFTLLELCG
QTQGLREHMCLNATLYKQLVGLIPQFADVCSDLRAQQESSKCLLQRIFDMLPARYEFDTS
QLCVEPAPMLIDLIHKLSVCEMDVGEQEGFLVVLGYVLRVLDFVVGLSSGLDEGEREARQ
GLGQAILLSSLLDNTSWASLQPEASTSVLHTVGVFLRREQNTTVKEDLLSCFSPVLWDLI
QQNGNSSALRVLLQEYLQMPKDSIRSLVMSAEKEAVKRFISHMHQSWDQLQVETSQASQQ
ELQAMETMTAAFIHKFPRVTPELFVDLSQFIPFMSVSDIMNFPASLIVNDSVLTAIRDHS
SEMKSLQKKAFVKRLLQSNMVGDVPTWPPYFLSSILPLLPYLPVHHFQQLTSQQLSPLVE
LIGNSSLDGVRGRHVLRTIFSKRKNLTGDDLLRLGVLACYLDPAELGLYLQDPAVSSALW
QQLSQCISKGLISSSGRLSSWLIPAVSSRLNISSVTSSELSALSGLLPQLGASFLLSLTS
QRLLEILSQPGFHTFSPAQSFQILSKIKKDSNLSVENLCSLKPLLSGLFPAALRDLRWTD
FSEDAHCPCWRRLQTELKPGHRAMLFNAMQETLHKDSRNFSQQANCLLPFVPLRKLIPAM
SGDTIWRGISAYRDVQWSPQQAQFLFRQIYEFKTITIKMVKDLGHVAAGMSCDFVRRLTN
HTDFTELLQFLTDLPGGPRPALRKCLVDELRKQPELDLGSLSSGFAATLPVTMLENLSNA
SVRGILSHIQLHFLDFLRLPHYKQTSLAGKALSELGSSLAQGMIDGALLDVLGPLLPFLD
RDSLALVDRGALALRLEEMRSFCLPKEALRDFSDLLTQRDLLGNPSKWQVGDVEHLGRLV
FALSTKQINSIPLTVLNKTTVEQVLVGQKRWEKSLVGGICISQCVDQQYHRKQTWSLIRG
IVKARNRRAKVPVPSCADIRGTFPSAWTPTQLRRMSLDELKECVEVFGQDPLLSSEQRRS
LWVKLRQSLSPVRELRADQVLALGSLLAEMGDRELQDTSLTDLGVLVHLGSLTNWTPRKM
RAVVLSVLRKSGLKVEHLSVVDMATLGHLICGLNPTEIKRLSPYNLSVAVLFLRETTLPC
TEQQMEALTNCLARVEAFGPVSAWGPEIFTEIGTLAAGLPDIVLSALLQEQMEGITPEAV
ALMSPKKMAVVFSAVQLSWLSAEQAWAVTEEQWAELDAEQRHAVGLARYEGDFLMELRGR
NSSPSLLNTDSFALCSLALCLLLQQLI
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggtgaagaaagggtcaggaatggccgcttttaaattcacaaccatcatagtc
tgtgctgttttggttggacagaggacaggaggtgaaaaagtggaccacagagatgctctc
ctgaaggagatcgtctcaaaatggagtaaagaagcaggtttgagacccccacctgaaacc
aacaaggaccagtctttgccctcttgggttagaagcattatgggggggttaaaaactttt
tttcccagtaagaaccttccttcattaaacaagccaatagacagacgccgtctctctgga
ttcctgtacaacatttctctgtatctgcaagagatgggtgctgagctggaggacgtaccc
gcagagcaagatgaggaccagctctgggagaaggtgctgcatttctttctccagtctgaa
ggcaacgcagccctgaaccagtggaacggccatgtaccgcccagacccagcgttaaagtg
caggactggtttttgtccctgagaggaagtccgcactgggactggctgctggggctcctg
cagagtctcatcactctgtccgagcgtcagccccagaggccaatcttggctttcttatct
cagaactggaggacggtgagcgctgtgctggaggcgacactgcaggctgtaatcagcggg
acttacggccaggccagcgcaggccttcagggcttcatctgtgctctgaagggtcgtagc
gattgcgcctttagtgttagctggcttcagcagctgctgcagttcctggaaacacgcaac
tggaagccagtggtcagtttgcacccagcaggggaacctgtaggacatggcaagggcccc
agtgcatttggacgctttaaacccttcagtttgccccctgaggccatgttgaggcaggac
aggttttcagcaaatgcatctgcggaaaacatgatgagcatagaggacgagttggactcg
gtgcagagcttcctgctgcaggctttgtctcgttcaggtggcggggatcgaggcgggcag
caggcccagaaaaacctcgctctcgtgcagagtttggatggactgagacgaggccttctg
cacagggtgggcagttctgtctacggcagcctgagggagaaagtgtcacgagttaccatg
gcgatactcgacgatgtgagcagcctggtggaagtgccgcagcccaactttcagggccgc
tgctctgtgggcaacttaaggcagctgatcctgtgggggatcagacataatgtgacgtgg
aacgctcaggctttgggcgccagctctcagggtctcccaagctcactcccgtttctctcc
tgcccctccacccaggaggggaaattacagtcacctccactgccagctcagtcatcaaaa
aagactctatcttcacagaaacccttcaaacagactcaaagtcataaaccctcagctgca
ggtcccagacagttcacagagagtaacaggaagcagaaacagatggagttcttcacctcc
acagaaattctggaggcagcgtgtaatgactccatcccaggcttgacgggtgtctcgaac
ttcaccgtcttcctctactgcaaactgtttgaaggcgagaacgggtcgggtaatcctgct
gcgactcatttagggctcgatctgcatgccacttgctcggatgcagcctggtacctgtct
gctgttgaggaggacttcttctgggtccatgtctgcactgagttctttgcccatgaattc
aacaacacggtgtgtgccaactcttctttctggctgcagaaagcacagcaggctgcagca
ctacaggactatcatttctttaaccacacaagcattgatgacctttgtgtgcagctgtca
agagatgcagcattgaatcctgaactcagtgagaactgtctggctcagctgggcagcaag
tcgctcaatgccgaagctttcagaaactgcttccttcctaataactcggtactgatctca
gctctttgtggcagagactcccctggttcccagcaatccttgccagaaggcagctgggct
gcagcatactgctccaagattgacaacctcacctttgacgacacattcagagagccctgt
caatacagagaatggactgtggaaaagttcaccaacttcacactgctggagttgtgtgga
cagactcagggactgagagagcacatgtgtttaaatgctacgctgtacaagcaactggta
ggactgataccacagtttgcagatgtctgttcagacctgcgggctcagcaggaaagcagt
aagtgccttctgcaaaggatttttgacatgcttccagcacgctatgagtttgacacctcc
cagctgtgcgtggagccggccccaatgctgatcgacctcatacacaagctgagtgtgtgt
gagatggacgttggcgagcaagaggggtttctggtggtgctgggctacgtgctacgtgtc
ttggactttgtggtgggtctgtcctcggggctggacgaaggagaacgagaggcgagacag
ggtctgggccaggccatcctcctgtccagtctccttgacaacacttcctgggccagcttg
caaccggaggcctccacaagcgtccttcacaccgtgggggtcttcctgcgcagagagcag
aacaccaccgtgaaggaggacctgctgagctgcttcagtcctgtcctctgggacctcatc
cagcaaaatggaaactcgtccgctctcagggttctgttgcaggagtatctccagatgcca
aaagacagcattcgttctctggtgatgtctgcagagaaagaggctgtgaagagatttatc
tcccacatgcatcaaagttgggaccagcttcaagttgaaaccagccaggcctctcaacaa
gagttgcaggccatggagacaatgacagcggctttcatccacaagttccccagagtgacc
ccagagctctttgttgacctttctcagttcatccccttcatgtctgtttctgacataatg
aacttcccagcctccttgattgtgaacgacagcgtgctgacagccattcgtgaccacagt
tcagagatgaagtcgttgcagaagaaggcttttgtgaaacgactgctgcagtcaaacatg
gtgggcgacgtgcccacatggcctccgtacttcctcagctccatcctcccacttctgcct
tacctacctgtccatcattttcagcagctgacatctcaacagctgtctcctctggtggag
ttgataggcaacagcagtctggatggcgtgaggggccgccatgtgctgcggacaattttt
agtaagagaaagaacctaactggtgatgacctgctgagattaggagttctcgcgtgctac
ttggatcctgcagaactgggtttatatctccaggacccagctgtgtcctctgctctctgg
cagcagctgtctcagtgcatttccaaggggctcatcagttccagcggcaggctgtcatcc
tggttgatcccagcagtatcaagcaggctgaacatcagcagcgtgacatcttcagagctg
tctgcactcagcggtttgctgccccagttaggagcctccttcctgctgtcactcacctca
caacgactgctggaaatcctgtcacagccgggttttcacacattttcaccagcgcagtca
tttcaaattttatccaagatcaaaaaagacagtaatctttctgtggaaaacctgtgcagc
ctgaagccgttactctccggtctcttccccgctgcgctccgagacctccggtggactgat
ttcagtgaggatgcccactgtccgtgctggagaaggctgcaaactgagctcaagcctgga
cacagagccatgttattcaatgcaatgcaggagactctccacaaagactcgaggaacttc
tctcagcaggcaaactgtctgcttccctttgtccctctcagaaagctgataccagctatg
agtggcgacaccatttggagaggcattagcgcatacagagatgtacagtggtctccacag
caggctcaatttctgttcagacagatctatgaattcaaaactatcaccatcaagatggtg
aaagacctgggtcatgttgctgctggaatgagttgtgactttgtgaggcgtttgaccaac
cacacagattttactgagctgctgcagtttttgactgatctacctggaggtccaagaccg
gctctgcgaaaatgccttgtagatgagctgcggaaacaacctgaacttgacctcggttct
ttgagttctgggtttgcagcaacattacctgtaacaatgctagagaacctgtcaaatgcg
tctgtcagaggaatcctgagccacattcagctacactttcttgatttcctgagactgcct
cattataagcagacaagtttagctgggaaggccttatctgagctgggttcttctctggct
caggggatgattgatggcgcccttctggatgtcctggggcctctgttgccgtttttggac
agagacagcctggctctggtggacagaggagcgctggctctgcggctggaagagatgagg
agtttctgccttcccaaagaggcgctcagagactttagtgaccttctcactcagagagat
ttgcttggaaatccatccaaatggcaggttggggatgttgagcatctgggaaggttggtg
tttgctctctcaacaaagcagatcaactccatccccctgacggtattaaacaagaccaca
gtggagcaggttctggtgggtcaaaagcgctgggagaaaagtctggtcggtgggatctgt
attagtcagtgtgtggaccaacagtaccacagaaagcagacctggagtctaattcgagga
attgtcaaagcacgaaaccgcagagcgaaagtgccagtcccaagctgtgccgacatcaga
ggaacgttcccgtctgcttggacccccacccagcttcgccgcatgtccctagacgagctg
aaggagtgtgtggaagtctttggtcaggatccgttgctgagctctgagcagcgacggtcg
ctctgggtgaagctcaggcagtccttgagtccggtcagggagctgagagcggatcaggtg
ctagctttgggatcattgttggcagagatgggagacagagagcttcaggacaccagtctc
actgatctgggcgtgctggtacatctgggctcactgacgaactggacccctcgaaaaatg
agagcggtggttttaagtgtgctgaggaaaagcggactgaaagtggagcatttatcagtt
gttgatatggcaacgcttggccatctgatctgcggtctgaaccccacagagattaaacgc
ctgagcccctacaacctcagcgtggccgtcctgttcctgcgggaaacgaccctgccctgc
acagagcagcagatggaggcgctgacaaactgcctggccagagtggaggcctttggtcct
gtcagtgcttgggggccggagattttcactgaaatcgggacacttgcagcgggcctgcct
gatatagtgctgtcagctctgctgcaagaacaaatggagggaatcacccctgaagctgta
gcgctgatgtctccgaaaaagatggcagtggtgttcagtgcagtgcagttatcgtggctg
agtgcagagcaggcgtgggccgtcacagaggagcagtgggcagagctggacgccgaacag
aggcacgctgttggactggctcgctacgagggagacttcctgatggagctcagaggacga
aactcttctccatcgctcctgaacacggacagcttcgctctgtgctcactggctctgtgc
cttttgttacagcagctaatttaa
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integrated database retrieval system
