Xiphophorus hellerii (green swordtail): 116718361
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Entry
116718361 CDS
T07363
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhe03009
]
116718361 (ddx21)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116718361 (ddx21)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116718361 (ddx21)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Helicases
116718361 (ddx21)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116718361 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116718361
NCBI-ProteinID:
XP_032416118
LinkDB
All DBs
Position
4:13351491..13359970
Genome browser
AA seq
749 aa
AA seq
DB search
MPSKIIFETEEETTEKDMDTVAEAETFKVKNKSKEGKKLKKKQQQPEEQEEDPDCDPPAP
KKKKKKDKLAADQVNGHINEAADLNGNSGDVESPKKTKKKKKEASEKTQKQKKATTEEAT
NGHSTPNTPVQTPSQTPSQSSDELASDSENEQTPEQIEGAFSNFRISKVTIDKLKARGVT
YLFDIQVKSFNAVYDGEDVIAQARTGTGKTFSFALPLVEKLQNDSVEMMRGRPPKVLVLT
PTRELAIQVSKDFKDIAKRLSIACFYGGSSYNPQLDAIRNGIDILVGTPGRIKDHLENNK
LNLTKLKHVVLDEVDQMLDMGFAEQVEEILGTSYKKDSDTNPQTLLFSATCPPWVYDVAK
KYMRPGCKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVIGDVVQVYSGSHGRTIVFCET
KKEANELAMNASIKQSSQSLHGDIPQKQRETTLKGFRNGVFEVLVATNVAARGLDIPEVD
LVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVETKAGITFRRVGVPT
ANDIIKSSSKDATRFLDSVPAAAVEYFRESAEKLIKEKGAVDALAAALAHISGATSLEQR
SLLSSDSGYTTMQLQCSQEMHNLGYAWRTIKEQLGEDFENHIHRMTFLKGKTGVCFDVPA
DKVKEIQDNWKDCRRWQLTVATELPELEEKQFTNRGDRGGFRGGRGRGFGGNGGRNGGFR
SGGFRSGGGGGGYNNRGGHKRTFGQAFDY
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaatcatctttgaaactgaagaagaaaccaccgagaaagatatggacacc
gtcgcggaagctgaaaccttcaaggtgaagaacaagtcaaaggaaggtaagaagctgaag
aagaaacagcagcaacctgaggagcaggaggaggatccagactgtgatcctccagcaccg
aagaagaaaaagaagaaggacaagctggcagcggaccaagtgaacggccacatcaatgag
gccgctgacctgaatggtaacagcggggatgtagagtcaccaaaaaaaacaaagaagaag
aaaaaggaggcatcagagaagacccagaagcaaaagaaagcaaccactgaggaagcaacc
aatggacattccaccccaaacacaccagttcaaactcccagtcagaccccatcccagtca
agcgatgagttggccagtgacagtgaaaatgagcagacacctgagcagatagaaggagct
ttctccaacttcagaatttccaaagtcaccattgataaactgaaagctcggggagtcacc
tacttgtttgacattcaagtgaagtcatttaatgccgtatatgatggagaggatgttatc
gcccaagcccgtactggaacaggaaagaccttctccttcgccttaccgttggtagaaaag
ctccagaacgattcagtggagatgatgagaggccggcctcccaaggtgctagtcttgact
cctaccagagaattggctatccaggtctccaaggacttcaaagacattgccaaaagacta
tccatcgcctgtttctatggaggcagctcatataacccacagcttgatgctattcgtaac
ggaattgatattttggtgggaacgcccggtcgcattaaagatcaccttgagaacaacaaa
ctcaacctcaccaaactgaaacacgtcgttctggacgaagtggaccaaatgttggacatg
gggtttgcagaacaagttgaagagattttgggtacttcgtataagaaagacagcgacacc
aacccacagactcttctgttttctgcaacctgccctccttgggtgtatgatgtggccaag
aaatacatgaggccaggctgcaagcatatcgacttgatcggcaagaaaacacaaaaagcg
gcaacaactgttgagcacctggccatcacgtgccactggtcccagcgtgctgcagtgatt
ggagatgtagtccaggtgtacagtggcagccatggaagaacaatcgtcttctgcgaaact
aagaaggaagccaatgaattggccatgaatgcttctatcaaacagagttcccagtccctc
catggggatattccacagaaacagagagagacgactctgaaaggtttcaggaatggtgtc
tttgaggttcttgttgccacaaacgtcgccgcccgtggattagacatcccagaggtcgac
ttggtggtccagtgttctccgccaaaggatgtcgagtcctacatccatcgttcagggcga
acaggacgagcgggcaggactggcgtctgcatctgcttctaccagaggaaggaagaggac
cagttacgctacgtagagaccaaagccggaatcactttcaggcgagttggtgttccaact
gccaatgacatcatcaaatcatccagcaaagacgccaccaggtttttggactccgttcca
gccgcagctgttgaatatttcagggaatcggcagagaagctgatcaaagagaagggagcg
gtggatgcactcgctgctgctctggctcacatttctggagccacgagtctagagcagaga
tctctgcttagctctgactctggctacaccacaatgcagttgcagtgctcccaggagatg
cataatctaggttatgcctggagaaccattaaagagcagctgggagaagactttgaaaac
cacattcacagaatgaccttcctcaaaggcaaaacgggagtttgttttgatgtcccagct
gataaagtcaaagagattcaggataattggaaagactgtcgccgctggcagctgactgta
gccacagagctcccagagctggaggagaagcagttcaccaaccgcggagacagaggtggg
tttagaggcgggagagggcgcggctttggtggaaatggaggacgtaatggcggtttccgg
agcggcggcttccggagcggcggcggcggcggaggctacaacaaccgaggaggacacaaa
cggaccttcggccaagcgttcgattactga
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