Xiphophorus hellerii (green swordtail): 116718407
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Entry
116718407 CDS
T07363
Symbol
efl1
Name
(RefSeq) elongation factor-like GTPase 1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116718407 (efl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xhe03009
]
116718407 (efl1)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
GTPases
116718407 (efl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFL1
EFG_C
EFG_III
GTP_EFTU_D2
EF-G_D2
MMR_HSR1
RsgA_GTPase
EFG_IV
Motif
Other DBs
NCBI-GeneID:
116718407
NCBI-ProteinID:
XP_032416192
LinkDB
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Position
4:complement(35194900..35230238)
Genome browser
AA seq
1105 aa
AA seq
DB search
MGVTGLDKIKTLQRNPANIRNLCILAHVDHGKTTLADCLVANNGIISSRLAGKLRYLDSR
EDEQVRGITMKSSAISLHYSTGNQEYLLNLIDSPGHVDFSSEVSTAVRLCDGAIVVVDAV
EGVCPQTQVVLRQAWLENIRPVLVINKMDRLIMELKLTALEAYTHLQKILEQVNAVTGTL
FTSKVLEERAEKVKEEVNRDKDPSGDQVYDWSAGLEDADDSHLYFSPDQGNVVFASAIDG
WGFSIQHFAHIYSQKMGIRTEVLLKTLWGDFYLNTKIQRIMKGAQTKGKKPLFVQLVLDN
IWSLYDAVVTRRDKQKVEKVMTSLGIKVMTRDLRHSDPKVLLFAICNQWLPVSKAVLSMV
CEKLPSPLEMTAEKVEKLMSVGTRRFDSLPERTQELKTAFLQCSSEINAPVIIFVSKMFA
VDTKALPQKRQRPLNQEEITQRREVARQRHAEKLAAESLERATRSCSAPGEATMTRLPLK
PEEEEEQKEVFIAFARIYSGTVKKGQRVFVLGPKYDPAQGLSLLPEGSSTSDCIPEVPHL
SCCTVENLYLLMGRELEELEEIPAGNVMGIGGLEDCVLKTATLSASLACSPFTPLNFEAA
PIVRVAVEPKHPSEMPKLVSGMRLLNQADPCVEVLIQETGEHVLVTAGEVHLQRCLDDLR
ERFAKIEISVSKPIIPFRETVVRPPKVDMVNEELGKQQKVAVIHQVKEELSQGRSSDCQH
VDPDGLVTLTTPNRLATVCVRAIPLPQEVTVLLEKNSEVIRTLELMNSSLREGRAMDINL
RTLEAIAELKDHLQSLLQGRKWRNAVERIWAFGPRRYGPNILLNSIKDYSRPSVWQCLEW
RHSNDQVRAPASPLRDFDNSIISGFQLVTLSGPMCEEPLMGVCFSVERWDVESVAFSQNP
DTLKEDSGSPEALHDVNSHGNSEDVIAERKMDASSVDCYGPVSGQLIAAMKEACRHAFQA
QPQRLMAAMYTCEIMATAEVLGRVYGVLGKREGRVLHEEMKEGTDMFIITAVLPVAESFG
FADEIRKRTSGLASPQLVFSHWEVISSDPYWVPTTEEEYLHFGEKADSVNQALKYMNAVR
RRKGLFVEEKIVEHAEKQRTLGKNK
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcaccggcctggataagatcaaaaccctgcagcgaaacccggctaacatcaga
aatctgtgcatcctggcacatgttgatcacggtaaaaccactctggctgactgtctggtg
gcgaataatgggatcatatcaagtcgactggctgggaagctgagatatctggacagtagg
gaggatgaacaggttagaggaatcaccatgaagtccagcgccatctctctgcactacagc
acaggcaaccaggagtaccttctaaatctgatcgattctcctggtcatgtcgacttctcc
tctgaggtttccacagcggtgcggctgtgtgatggagccattgtggttgtagatgctgtt
gagggtgtgtgcccacagacccaggttgtcctccgacaggcctggcttgagaacatcagg
cctgttctggtcattaataagatggacaggctcattatggagctgaagctcaccgctctg
gaagcatacacgcacctgcagaagatcctggagcaggtcaatgctgtcacagggactctg
ttcacgtctaaagtgctcgaagagcgagcggaaaaggtgaaagaggaggtgaacagggac
aaggacccaagtggagatcaggtttatgactggagtgctggactggaggatgctgacgac
tctcacctctacttttctcctgaccaaggaaatgtggtgtttgccagcgccatagatgga
tggggtttcagcattcagcattttgcccacatatacagtcagaagatggggatcaggact
gaggtgctgctgaaaaccttgtggggagacttctatctcaacacaaaaattcagagaatc
atgaaaggtgctcagaccaaaggaaagaagccgctgtttgtgcaacttgtgctggataac
atttggagtttgtatgatgcagtcgttactagaagagacaagcagaaagtggaaaaggtg
atgacctcacttgggataaaggtgatgacaagggacctgcgtcactctgacccaaaagtt
ctcctctttgctatctgtaaccagtggctaccagtttccaaggctgtcctctcaatggtg
tgtgagaagcttcccagtcctttagagatgacagcagagaaagtggagaagctgatgagt
gttggaacccgtcgatttgattcactgcctgaaaggacgcaagaactgaagacagctttc
ctccagtgttccagtgagataaatgccccagtcatcatttttgtgtccaaaatgtttgct
gtggacaccaaagctttgcctcagaagagacagaggcctttaaaccaggaggagattact
cagcgtagggaagtggcaagacaaaggcatgctgagaaactggctgcagagagccttgag
agggccacccggtcatgtagtgctccaggagaagctactatgacacgtctgcctctaaaa
ccagaggaggaagaggagcagaaggaggtcttcatagcattcgcaagaatctacagtggg
acagtcaagaaaggtcaaagggtttttgttctgggaccaaagtatgatcctgctcagggc
ctgagtctgctgccagaaggatccagtacatctgactgtattccggaagtacctcatctg
tcctgttgtaccgtggaaaacctttacctgcttatgggccgagagcttgaagagttggag
gaaatccctgctggaaatgttatgggcattggaggtttggaggactgtgtcttaaagaca
gctaccctgtcagcgtcccttgcttgttcccccttcaccccactcaactttgaagctgca
cccattgtacgggttgctgtagagccaaaacatccaagtgagatgccaaagctggtttct
gggatgcgtttgttgaaccaggcagatccatgtgttgaggttctgatacaggaaacagga
gagcatgttctggtcactgctggagaagttcacctgcagcgctgtctagatgacctcaga
gagaggtttgccaagatagagattagtgtgtctaagcccataattccattcagagaaact
gtggtgagacctccaaaggtggatatggtgaatgaggaacttggcaagcaacaaaaagtt
gctgtcattcatcaggtgaaagaagaactctctcagggtcgttcatctgactgccagcat
gtggatcctgatggtcttgttaccctcaccactcctaacagacttgctactgtctgtgta
cgggccatcccattaccacaagaggtgactgttctcttggagaaaaactctgaggtaatt
cggactctggagctgatgaactcatccctcagggaggggagagccatggacataaatctc
aggaccctggaggctattgcagaactgaaagaccatcttcagagcttgctgcagggaaga
aagtggcggaacgctgtggaacggatctgggcttttgggcctcggaggtatggtcccaac
attcttctgaacagcattaaagactacagccgaccatcagtgtggcagtgtcttgagtgg
agacacagtaatgatcaagttagagctccagcttctccactccgagactttgataacagt
atcatcagtggtttccaacttgtaaccctgtctggtcccatgtgtgaagaacccctgatg
ggagtttgcttctcggttgagaggtgggatgtcgagtctgtagctttttcacaaaatcca
gacaccttgaaagaggactctggatcccctgaagcattgcatgatgtcaattcacatgga
aacagtgaagatgtgatagcagagcgaaagatggatgcttcttctgtggactgctatggg
ccagtctctggccagctgatcgcggccatgaaggaggcatgccggcatgccttccaggct
cagccccagagactgatggcagccatgtacacttgtgagatcatggcaactgctgaggtg
ctgggccgggtttatggtgtacttggaaagcgagaaggtcgagtcctccatgaagagatg
aaagaagggacagatatgtttatcatcacagctgttcttcctgtggctgagagcttcgga
tttgctgatgagatccgcaagaggacaagtggactggccagtccacagctggttttcagc
cattgggaggtgatcagcagtgacccatactgggttcctaccacagaagaagaatacctg
cattttggagagaaggcggactctgtgaaccaggccctgaaatacatgaacgctgtccgt
cgacggaaaggtctttttgtggaggagaagatcgttgagcatgcagagaaacagaggaca
cttggcaagaacaagtag
DBGET
integrated database retrieval system
