Xiphophorus hellerii (green swordtail): 116718588
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Entry
116718588 CDS
T07363
Symbol
amfr
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR isoform X1
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04137
Mitophagy - animal
xhe04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116718588 (amfr)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116718588 (amfr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116718588 (amfr)
Enzymes [BR:
xhe01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
116718588 (amfr)
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116718588 (amfr)
Multi subunit type E3
ERAD complex
116718588 (amfr)
LMBR1L-GP78-UBAC2 complex
116718588 (amfr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_UBOX
zf-rbx1
zf-RING_11
zf-ANAPC11
zf-RING_5
zf-RING_16
Prok-RING_4
zf-RING_Vps41
zf_RING_Vps8
RING_XB3-XBAT31
zf-C3HC4_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
116718588
NCBI-ProteinID:
XP_032416597
LinkDB
All DBs
Position
4:10682834..10692640
Genome browser
AA seq
622 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSVALLAGSIFSAYTTVTDPGFGALETDDTPAPSDVDLEHL
SNAVGNTELARTVLWYLITDSLFVWVLVNTFCCSLMLIAKMIQYVVFGPLRVSEKQHLKD
KFWNFIFYKFIFIFGVLNVQTVEEVVMWCLWFSALVFLHLMVQLCKDRFDYLSFSPSTPM
NSHVRVLCLLVSLLLDCCGLAVVCGLLGASHGMHTLSFMAAECLLVTVRTGHVIMRYSIH
LWDLNHPGTWESKGTYVYYTDFIMELAMLFLDLMHHIHMLLFGNIWLSMASLVIFMQLRY
LFHEVQRRIRRHKNYLRVINNMEARFAIATAEELAANDDDCAICWDTMLTARKLPCGHLF
HNSCLRSWLEQDTSCPTCRTSLNINGDGAPGGNQQQGPGLEDNIGPVGAAPETRPHINQH
NHFFHFDGSRIASWLPSFSVEVMHTTNILGMAQANNSQLMAMAHQIQEMFPQVPSYLVIQ
DLQLTRSVEVTTDNILEGRIQVPFPAQAIERGPLQGGQAEDEQPGPSGEAEQNPSESDNM
EARGGRFSKSAEERQKMLKLRKEEMLQQARRRFLNKGEEDNEEDLPRLEEDSLTQLDSTV
LRRRTMAAAAERRMQHQEEPAP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctgtttctggagaggtttccctggcccagcctgcagacctacactgcactg
agtgtggctttgctggctggcagcatcttcagtgcctatactactgtcactgacccaggg
tttggggccttggaaactgatgacacgccagctccctctgatgttgatcttgaacatctg
agcaatgcagttggtaacacagaactggccagaactgtcttgtggtatctaattacagac
agtctgtttgtatgggtgctagtgaacacattttgctgctctttgatgttaattgcaaaa
atgatccagtatgtggtttttgggcccctcagagtcagtgagaagcagcatcttaaggat
aaattctggaacttcatcttctacaagttcattttcatatttggagtgttgaatgtgcaa
accgtagaagaagtggtcatgtggtgtttgtggttctcagccttggtctttctccatctc
atggttcagctctgcaaagatcgctttgattatctttctttctccccatcaaccccgatg
aacagccatgtgagagtgctgtgcctgctggtctccctgctcctggactgctgtggcctg
gctgtggtctgtggcctgctgggagcctcccatggcatgcacacactctcctttatggct
gcagagtgtctgttggtgacggttcgcactggacatgtcattatgaggtactccatccat
ctgtgggatctgaaccatccaggaacctgggagagcaaaggcacatacgtctactacaca
gacttcatcatggagctggctatgctctttctggatctgatgcatcatatccatatgctg
ctgtttggtaacatctggctgtccatggcgagcttggttatctttatgcagttgcgatat
ctgttccatgaggtccagcggcgcattcgcagacacaagaactaccttcgagtcatcaac
aacatggaggccaggtttgcaattgctactgcagaggaactggctgcaaatgatgacgac
tgcgccatctgctgggacaccatgctaacagcacgcaaactgccctgtggccatcttttc
cacaactcttgcttgcgttcgtggcttgagcaggacacgtcatgtcccacatgtcgaaca
tccctgaacattaatggggacggagctccgggtggaaaccagcagcagggtcctgggttg
gaagacaacattggcccagtaggtgctgctccagaaactcggccacacatcaaccaacac
aatcacttcttccactttgatggatctcgcattgccagctggctgcccagtttttctgtt
gaagtaatgcatactactaatatcttgggcatggctcaggctaacaactcccagcttatg
gccatggcccatcagattcaggagatgttccctcaggtgccctcctaccttgttattcag
gacctgcagctgacccgttccgttgaggtcactacagacaacattttggaaggacgaatc
caggtgcctttccctgcacaggccatagagcgcggtccgctccaggggggccaagcagaa
gatgagcagccaggtcccagcggagaagcagagcagaaccccagtgagtcagataacatg
gaagccagaggcggccgcttctccaagtctgccgaggagaggcagaagatgctaaagctg
agaaaagaagaaatgctccagcaagcgcgcaggagatttctaaacaagggtgaagaagat
aatgaggaggacttgcccagactggaagaggactcactcacacaactggactccactgtg
ctgaggcgtagaaccatggcagcagctgcagagagacgcatgcaacaccaagaggaacct
gcgccctga
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